CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 6.078e-79
Identity = 134/197 (68.02%), Postives = 162/197 (82.23%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWELYCLEHGI PDG MPSD ++G   D+F TFF ETG+G+HVPRAVFVDLEP+VIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+RKL+D CTGLQGFLVF++                  VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.955e-77
Identity = 132/197 (67.01%), Postives = 159/197 (80.71%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWELYCLEHGI PDG MPSD ++G   D+F TFF ETG+G+HVPRA+FVDLEP+VIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYT+G+EI+D  LDR+RKLAD CTGLQGFL F++                   DYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.162e-76
Identity = 133/197 (67.51%), Postives = 160/197 (81.22%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAGIQVGN+CWELYCLEHGI+PDG++  D +     DAF+TFFSET +G+ VPR VF+DLE  VIDEV+ G Y+ L+HPEQLI G EDAANN+ARGHYT+G+EI+++ LDR+RKL +NC+GLQGFL+FN+V                 +DYGKKSKLGFT+YPSPQVSTAVVEPYNSVL+THSLLEHTDVAV+L
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGINPDGSIIQDFNKKKNDDAFSTFFSETSTGKRVPRCVFLDLESGVIDEVKNGRYKNLYHPEQLICGNEDAANNYARGHYTIGKEIIEIALDRIRKLVENCSGLQGFLIFNSVGGGTGSGLGSLLLERLSLDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLATHSLLEHTDVAVVL 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.954e-75
Identity = 125/197 (63.45%), Postives = 164/197 (83.25%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWELYCLEHGI PDGTMP+ ++     ++F TFFS+TGSG++VPR++FVDLEP+V+DE+RTG+Y++LFHPEQ+I+GKEDAANN+ARGHYTVG+E++D  LDR+R+LADNC+GLQGF VF++                  VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 202          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.507e-74
Identity = 124/197 (62.94%), Postives = 160/197 (81.22%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG Q+GN+CWELYCLEHGI PDG +  + +     D F+TFFSETGSG++VPR+++VDLEP+VID+VRTG+YR LFHPEQLI+GKEDAANN+ARGHYTVG+E++D  LDR+R++ADNCTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++
Sbjct:    8 HVGQAGTQIGNACWELYCLEHGIEPDGRLSPEKTTKPLDDGFSTFFSETGSGKYVPRSIYVDLEPNVIDQVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKELIDHVLDRIRRVADNCTGLQGFLVFHSFGGGTGSGFGALLLERLSVDYGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLEHSDCSFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.922e-73
Identity = 127/197 (64.47%), Postives = 156/197 (79.19%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWEL+CLEHGI  DGT  +  S     D+F TFFSETG+G+HVPRAV VDLEP+V+DEVR G+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F++                  +DYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.922e-73
Identity = 127/197 (64.47%), Postives = 156/197 (79.19%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWEL+CLEHGI  DGT  +  S     D+F TFFSETG+G+HVPRAV VDLEP+V+DEVR G+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F++                  +DYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.922e-73
Identity = 126/197 (63.96%), Postives = 156/197 (79.19%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWEL+CLEHGI  DGT  +  S     D+F TFFSETG+G+HVPRAV +DLEP+V+DEVR G+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F++                  +DYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.110e-72
Identity = 126/197 (63.96%), Postives = 155/197 (78.68%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWEL+CLEHGI  DGT  +  S     D+F TFFSETG+G+HVPRAV VDLEP+V+DEVR G+YR LFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F++                  +DYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.196e-72
Identity = 131/203 (64.53%), Postives = 161/203 (79.31%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSD----TSVGACHDAFNTFFSETGSGQHV-PRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDY-GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG+QVGNSCWELYCLEHGI  DG++P+D    + V   +    TFFSE+ +G+ V PRA+F+DLEP+VIDE+RTG Y+ LFHPEQLI+GKEDAANN+ARGHYTVG+E++D+C+DR+R+LAD C GLQGFLVF++V                 +DY GKKSKL F +YPSPQVST+VVEPYNSVLSTHSLLEHTDV+ +L
Sbjct:    9 HIGQAGVQVGNSCWELYCLEHGIERDGSIPADRKQSSDVNNLNKDLGTFFSESTNGKKVVPRAIFLDLEPTVIDEIRTGDYKNLFHPEQLITGKEDAANNYARGHYTVGKELIDVCVDRIRRLADQCDGLQGFLVFHSVGGGTGSGFGSLLLQKLALDYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFML 211          
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA4A_BOVIN6.078e-7968.02Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA5_CHICK1.955e-7767.01Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBAN_GUITH2.162e-7667.51Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA2_CAEEL6.954e-7563.45Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA1_PNECA4.507e-7462.94Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA8_RAT2.922e-7364.47Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE2.922e-7364.47Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN2.922e-7363.96Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN1.110e-7263.96Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA_DICDI7.196e-7264.53Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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