CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.960e-69
Identity = 117/197 (59.39%), Postives = 152/197 (77.16%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+ NSCWELYCLEHGI PDG +  +         FNTFFSETG G++VPR ++ DLEP+V+DEVRTG YR LFHPEQ+I+GKEDA+NN+ARGHYTVG+E++D CLD+VR++ADNC+GLQGFLVF++                  VDYGKK+KL F +YP+PQ +T+VVEPYNS+L+TH+ LEH+DV  ++
Sbjct:    8 NVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPDQGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 7.447e-69
Identity = 115/197 (58.38%), Postives = 152/197 (77.16%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+ NSCWELYCLEHGI PDG +  +         F+TFFSETG+G+HVPRA++ DLEP+V+DEVRTG+YR LFHPE +I+GKEDA+NN+ARGHYTVG+E++D  LD++R++ADNC GLQGFLVF++                  VDYGKKSKL F +YP+PQ +T+VVEPYNS+L+TH+ LEH+D + ++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAQDPDQGFSTFFSETGNGKHVPRAIYCDLEPNVVDEVRTGAYRNLFHPEMMITGKEDASNNYARGHYTVGKELIDGVLDKIRRVADNCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.270e-68
Identity = 115/197 (58.38%), Postives = 152/197 (77.16%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+ NSCWELYCLEHGI PDG +  +       D F+TFFSETG+G++VPR ++ DLEP+V+DEVRTG+YR LFHPE +I+GKEDA+NN+ARGHYTVG+E++D  LD+VR +ADNC+GLQGFLVF++                  VDYGKK KL F +YP+PQV+T+VVEPYNS+L+TH+ LEH+D + ++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDDDGFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.659e-68
Identity = 116/197 (58.88%), Postives = 151/197 (76.65%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+ NSCWELYCLEHGI PDG +  +         F+TFFSETG+G++VPR ++ DLEP+VIDEVRTG+YR LFHPE +ISGKEDA+NN+ARGHYTVG+E++D  LD+VR++ADNC+GLQGFLVF++                  VDYGKKSKL F +YP+PQ +T+VVEPYNS+L+TH+ LEH D + ++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHADCSFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.233e-68
Identity = 120/197 (60.91%), Postives = 150/197 (76.14%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG+Q+GN+CWEL+CLEH I PDGT     S     D+F TFF ET   ++VPRA+ VDLEP+V+DEVRTG+YR LFHPEQLI+GKEDAANN+ARGHYTVG++ VD+  DR+RKLAD+C+GLQGFL+F++                  V+YGKKSKL F IYP+PQ S+AVVEPYNSVL+TH+ LEH+D   ++
Sbjct:    8 HIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPS---SDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMV 201          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.404e-67
Identity = 121/197 (61.42%), Postives = 151/197 (76.65%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSD-TSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQAG Q+GN+CWELY LEHGI PDG +    T      + F+TFF+ETGSG+ VPRAV+VDLEP+VIDEVRTG+YR+LFHPEQLISGKEDAANN+ARGHYTVGRE++D  LDR+RK++D C GLQGFL  +++                 +DYGKKSKL F +YP+PQVST+VVEPYN+VL+TH+ LEH D   ++
Sbjct:   10 VGQAGCQIGNACWELYSLEHGIRPDGYLQEGLTKPKGGEEGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGHYTVGRELLDDILDRIRKISDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSIDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMV 206          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.834e-67
Identity = 116/197 (58.88%), Postives = 153/197 (77.66%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG Q+GN+CWELYCLEHGI P+G M  +T+       F+TFFSETG G++VPR+++VDLEP+VID+VRTG YR LFHPEQLI+GKEDA+NN+ARGHYTVG+E+VD   D++R++ADNC+GLQGFLVF++                  ++Y KKSKL F++YP+PQVST+VVEPYNSVL+TH+ L+  D   ++
Sbjct:    8 HVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.396e-67
Identity = 114/201 (56.72%), Postives = 156/201 (77.61%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSV----GACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWELYCLEHGI PDG    ++ V       +D F TFFSETG G+ VPR+++VDLEP+VID+VRTG Y+ LFHPEQ+++GKEDA+NN+ARGHYTVG+E++D  L+R+R++ADNC+GLQGFLVF++                  ++YGKKS L F++YP+PQVST+VVEPYNSVL+TH+ L+++D   ++
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMV 208          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.086e-67
Identity = 114/197 (57.87%), Postives = 151/197 (76.65%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+ NSCWELYCLEHGI PDG +  +         F+TFFSETG G++VPR ++ DLEP+V+DEVRTG+YR LFHPE LI+GKEDA+NN+ARGHYTVG+E++D  LD+VR++AD+C+GLQGFLVF++                  VDYGKKSKL F +YP+PQ +T+VVEPYNS+L+TH+ LEH+D + ++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.028e-66
Identity = 123/201 (61.19%), Postives = 152/201 (75.62%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMP----SDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG Q+GNS WELY LEHG+  DG +      D + G    +F TFF+ETGSG++VPR++FVDL+PS IDE+RTG YRQLFHPEQLISGKEDAANN+ARGHYTVG+E+VD  +DRVR+L+DNC+ LQGFLVF++                   +YGKKSKL F +YPSP+VSTAVVEPYN+VLSTHS +E++D   L+
Sbjct:    9 HIGQAGTQLGNSAWELYLLEHGLGADGRLDPEKGEDINAGG---SFETFFTETGSGKYVPRSIFVDLDPSPIDEIRTGPYRQLFHPEQLISGKEDAANNYARGHYTVGKELVDTVVDRVRRLSDNCSSLQGFLVFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPSPRVSTAVVEPYNAVLSTHSTIENSDCTFLV 206          
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA_AJECA1.960e-6959.39Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_GIBZE7.447e-6958.38Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_MYCGR1.270e-6858.38Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA2_NEUCR1.659e-6858.88Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA2_CHICK8.233e-6860.91Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_ASHGO1.404e-6761.42Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA2_SCHPO1.834e-6758.88Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA1_SCHPO2.396e-6756.72Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA1_EMENI4.086e-6757.87Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA2_EMENI2.028e-6661.19Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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