CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.006e-65
Identity = 112/197 (56.85%), Postives = 152/197 (77.16%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWELY +EHG+ PDG + SD S     D F+TFFSET SG++VPR+++VDLEP+VIDEVR G YR LFHPE +I+GKEDAA+N+ARGHYT+G+E +D+ +D+VR+L DNC GLQGF VF++                   DYGKKSKL F++YP+P ++++VVEPYNSVL+TH+ LEH+D + ++
Sbjct:    8 HVGQAGVQIGNACWELYTIEHGLSPDGRL-SDDSPSKHDDGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVYPAPTLASSVVEPYNSVLTTHTTLEHSDCSFMV 203          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.314e-65
Identity = 120/199 (60.30%), Postives = 151/199 (75.88%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPS--DTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+GN+CWELY  EHGI PDG +    D   G   + F+TFFSETGSG++VPRA++VDLEP+VIDEVRTG Y+ LFHPEQLI+GKEDAANN+ARGHYTVGREI+D  LDRVR+++D C GLQGFL  +++                 +DYGKKSKL F +YP+PQVST+VVEPYN+VL+TH+ LEH D   ++
Sbjct:    8 NVGQAGCQIGNACWELYSQEHGIRPDGYLQEGLDRPKGG-EEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGHYTVGREILDDILDRVRRMSDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSLDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMV 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.242e-65
Identity = 112/197 (56.85%), Postives = 149/197 (75.63%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+ NSCWELYCLEHGI PDG +  +         F+TFFSETG+G++VPR ++ DLEP+VIDEVRTG+YR LFHPE +ISGKEDA+NN+ARGHYTVG+E++D  LD+VR++ADNC+GLQGFLVF++                  VDYGKKSKL F +YP+PQ +T+VVEPY++ L+T++ LE  D + ++
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNTTLEQADCSFMV 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.995e-65
Identity = 110/197 (55.84%), Postives = 151/197 (76.65%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWELY LEHG+ PDG +  D+   + HD+ +TFFSETG G+HVPR ++VDLEP VID+V+ G YR LFHPE +I+GKEDAANN+ARGHYTVG+E++D  +D++R+LADNC+G QG  VF++                   DYGKK+KL F +YP+PQ+S++VVEPYNS+L+TH+ LEH+D + ++
Sbjct:    8 HVGQAGVQIGNACWELYTLEHGLSPDGRLMDDSP--SKHDSGSTFFSETGQGKHVPRRLYVDLEPGVIDDVKNGPYRSLFHPETMITGKEDAANNYARGHYTVGKELIDPVMDKLRRLADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKAKLEFCVYPAPQLSSSVVEPYNSLLTTHTTLEHSDCSFMV 202          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.229e-64
Identity = 118/198 (59.60%), Postives = 145/198 (73.23%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVG-ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+GN+CWELY LEHGI PDG +    S      + F+TFF ETG G+ VPRA++VDLEP+VIDEVR G Y+ LFHPEQLISGKEDAANN+ARGHYTVGREI+   LDR+RKLAD C GLQGFL  +++                  +YGKKSKL F +YP+PQVST+VVEPYN+VL+TH+ LEH D   ++
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMV 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 9.420e-64
Identity = 114/197 (57.87%), Postives = 148/197 (75.13%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG Q+GNS WELY LEHG+  DG    D++V     +++TFF+E+ +G++VPR++FVDL+PS IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYTVG+E+ +  LDR+RK+ DNC  LQGFLVF++                   DY KK KL F++YP+P+V+TAVVEPYN+VL+THS LEH+DV  L+
Sbjct:    9 HLGQAGTQLGNSAWELYLLEHGLTQDGRKDPDSTVAGEGGSYDTFFTESSNGKYVPRSLFVDLDPSPIDEIRTGPYRQLFHPELLISGKEDAANNYARGHYTVGKEMAENVLDRIRKITDNCHSLQGFLVFHSFGGGTGSGFGALVLERLAQDYAKKCKLEFSVYPAPRVATAVVEPYNAVLATHSTLEHSDVTFLV 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.741e-63
Identity = 116/205 (56.59%), Postives = 149/205 (72.68%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDA--------FNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAGIQ+G++CWELYCLEHGI P+G +  DT      +A        F+TFF ET +G+HVPRA+FVDLEP+VID +RTG +R LFHPEQL+SGKEDAANN+ARG Y+VG E++DL L+R RKLA+ C GLQGFL+F +                   +Y +K+KL F++YP+P++STAVVEPYNSVL+THS  EHTD   ++
Sbjct:    8 HIGQAGIQIGDACWELYCLEHGIQPNGVV-LDTQQDQLENAKMEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAPRISTAVVEPYNSVLTTHSTTEHTDCTFMV 211          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.777e-62
Identity = 112/197 (56.85%), Postives = 145/197 (73.60%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG Q+GNS WELY LEHG+  DG             ++ TFF+ET +G++VPR++FVDL+PS IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYT+G+E+VD  +DR+R++ADNC  LQGFL+F++                   +YGKKSKL F +YP+P+VSTAVVEPYN+VLSTHS +E++D   L+
Sbjct:    9 HLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGGSYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGHYTIGKEMVDNVIDRIRRVADNCHSLQGFLIFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPAPRVSTAVVEPYNAVLSTHSTIENSDCTFLV 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.777e-62
Identity = 114/198 (57.58%), Postives = 146/198 (73.74%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVG-ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++GQAG Q+GN+CWELY LEHGI  DG +    S      + F+TFF ETG G+ VPRA++VDLEP+VIDEVRTG +++LFHPEQLI+GKEDAANN+ARGHYTVGREIVD   +R+RK+AD C GLQGFL  +++                  +YGKKSKL F +YP+PQ+ST+VVEPYN+VL+TH+ LEH D   ++
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHTTLEHADCTFMV 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.817e-62
Identity = 106/197 (53.81%), Postives = 147/197 (74.62%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG Q+GN+CWELYC+EHG+   G +  +        +   FFSE+ +G+HVPRA++VDLEP+V+DE+R G Y  LFHP+Q+I+GKEDAANN+ARGHYT+G+E++D+ LDR+RK  +NC GLQGFLVF++                  V++GKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LE +D + ++
Sbjct:   12 HIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDRIRKQTENCEGLQGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLELSDCSFMV 207          
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBAA_SCHCO1.006e-6556.85Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA_CANAL1.314e-6560.30Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA_SORMA2.242e-6556.85Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBAB_SCHCO4.995e-6555.84Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA1_YEAST4.229e-6459.60Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_NEUCR9.420e-6457.87Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBAL3_HUMAN2.741e-6356.59Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA_GLOLA1.777e-6256.85Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA3_YEAST1.777e-6257.58Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA8_CAEEL8.817e-6253.81Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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