CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.964e-61
Identity = 112/164 (68.29%), Postives = 135/164 (82.32%), Query Frame = 3
Query:  249 SVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LDR+RKLAD CTGLQGF VF++                  VDYGKKSKL F+IYP+ QVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    2 TIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHTTLEHSDCAFMV 165          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.836e-60
Identity = 106/204 (51.96%), Postives = 148/204 (72.55%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPS-------DTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG+Q+G++CWELYCLEHGI PDG +         +  V   + + +TFF ET +G+HVPR +F+DLEP+VID +R G Y  LFHPEQL++GKEDAAN +ARG Y+VG E+++L L+R+RKLA+ C+GLQGFL++ +                  V+Y KK KL F++YPSP++STAVVEPYN++L+THS +E++D A ++
Sbjct:    8 HIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMV 211          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.704e-60
Identity = 109/197 (55.33%), Postives = 145/197 (73.60%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAGIQ G   W L C EHGI+ DGT  S ++ G  +   +  FSE   G++VPR + VDLEPSV+D VR  SY++L+HP Q+I+G+EDAANNFARGHYTVG++++D+ +DR+RK+ADNCT LQGF +F++V                 V++ KK KL +T+YPSPQ++T+VVEPYNSVLSTHSLLEH D++V+L
Sbjct:    8 HIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANG--NSDCSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGHYTVGKDMLDVTVDRLRKIADNCTSLQGFQIFHSVGGGTGSGFASLLVERLSVEFPKKCKLSYTVYPSPQLATSVVEPYNSVLSTHSLLEHNDISVVL 202          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.349e-59
Identity = 100/197 (50.76%), Postives = 147/197 (74.62%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG+Q+GN+CWELYC EHGI P+G +  +       ++  +FFS T  G +VPR + VDLEP V+D ++TG YR+L+HP QLISGKEDAANN+ARGHYTVG+EI++  ++++R++AD+C GLQGFL++++                   ++GKKSKL F++YP+P+++TAVVEPYNS+L+TH+ L+++D + L+
Sbjct:    8 HIGQAGVQIGNACWELYCKEHGILPNGQLDQNKMDD---ESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLV 201          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.124e-59
Identity = 109/208 (52.40%), Postives = 149/208 (71.63%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMP---------SDTSVG---ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            IGQ GIQ+GN+CWELY LEHGI+ DG++          S  SVG   + +DA  TFF+ETG+G+ VPR++FVDLEP+VID+VR G  R+L+HPEQLISGKEDAANN+ARG Y++G+E++D    R++K+A+ C  LQGFL+F+++                  DY KK KL F +YPSP+VSTAVVEPYN++L+THS ++H+D   ++
Sbjct:    9 IGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDA-RTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHSTMDHSDCVFMV 215          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 3
Query:  186 CWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGL 524
            CWELY LEHGI PDG MPSDT+VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG EIVDLCLDRVRKLADNCTGL
Sbjct:    1 CWELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.037e-50
Identity = 89/182 (48.90%), Postives = 133/182 (73.08%), Query Frame = 3
Query:  195 LYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            LYC EHGI PDG +  +       ++  +FFS+T  G +VPR + VDLEP V++ ++TG YR+L+HP QLISGKEDAANN+ARGHYTVG+EI++  ++++R++ADNC GLQGFL++++                   ++GKKSKL F++YP+P+++TAVVEPYNS+L+TH+ L+++D + L+
Sbjct:    1 LYCKEHGILPDGRLDQNRMDD---ESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLV 179          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.037e-50
Identity = 95/203 (46.80%), Postives = 136/203 (67.00%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTS------VGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +IGQAG Q+GN CWEL+CLEHGI PDGT  ++++       G    A+N FF E  +G+HVPRA+FVD EP+VIDE++TG Y  L+HPE LI GKEDA++NFA+G  T    +++  +D +RK  +NCTGLQGF ++N+V                   Y KK+KL   I+PSP++S+ VVEPYN+VL+TH++++  +   ++
Sbjct:    8 NIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMV 209          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.661e-50
Identity = 100/119 (84.03%), Postives = 102/119 (85.71%), Query Frame = 3
Query:  384 LFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            LFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL
Sbjct:    1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 119          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.942e-42
Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 3
Query:  369 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            G+YRQ+FHPEQLI+GKEDAANN+A GHYT+G+E +DL LDR+RKLAD CTGLQGFLVF+++                 V+YGKKSKLGF+IYP+PQVSTA+V+PYNS+L+TH+ LEH+D A ++
Sbjct:   20 GTYRQIFHPEQLITGKEDAANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMV 143          
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA1_CHICK1.964e-6168.29Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBAL3_MOUSE2.836e-6051.96Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA6_NAEGR3.704e-6055.33Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA_ENCCU5.349e-5950.76Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA4_DROME9.124e-5952.40Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA_PICAB2.747e-5589.38Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]
TBA_ENCHE2.037e-5048.90Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBA1_ENTHI2.037e-5046.80Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA2_ANEPH2.661e-5084.03Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA4B_HUMAN5.942e-4262.90Putative tubulin-like protein alpha-4B OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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