CF835732
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.964e-61 Identity = 112/164 (68.29%), Postives = 135/164 (82.32%), Query Frame = 3 Query: 249 SVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 ++G D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LDR+RKLAD CTGLQGF VF++ VDYGKKSKL F+IYP+ QVSTAVVEPYNS+L+TH+ LEH+D A ++ Sbjct: 2 TIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHTTLEHSDCAFMV 165
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 2.836e-60 Identity = 106/204 (51.96%), Postives = 148/204 (72.55%), Query Frame = 3 Query: 150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPS-------DTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 HIGQAG+Q+G++CWELYCLEHGI PDG + + V + + +TFF ET +G+HVPR +F+DLEP+VID +R G Y LFHPEQL++GKEDAAN +ARG Y+VG E+++L L+R+RKLA+ C+GLQGFL++ + V+Y KK KL F++YPSP++STAVVEPYN++L+THS +E++D A ++ Sbjct: 8 HIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMV 211
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 3.704e-60 Identity = 109/197 (55.33%), Postives = 145/197 (73.60%), Query Frame = 3 Query: 150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 HIGQAGIQ G W L C EHGI+ DGT S ++ G + + FSE G++VPR + VDLEPSV+D VR SY++L+HP Q+I+G+EDAANNFARGHYTVG++++D+ +DR+RK+ADNCT LQGF +F++V V++ KK KL +T+YPSPQ++T+VVEPYNSVLSTHSLLEH D++V+L Sbjct: 8 HIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANG--NSDCSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGHYTVGKDMLDVTVDRLRKIADNCTSLQGFQIFHSVGGGTGSGFASLLVERLSVEFPKKCKLSYTVYPSPQLATSVVEPYNSVLSTHSLLEHNDISVVL 202
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 5.349e-59 Identity = 100/197 (50.76%), Postives = 147/197 (74.62%), Query Frame = 3 Query: 150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 HIGQAG+Q+GN+CWELYC EHGI P+G + + ++ +FFS T G +VPR + VDLEP V+D ++TG YR+L+HP QLISGKEDAANN+ARGHYTVG+EI++ ++++R++AD+C GLQGFL++++ ++GKKSKL F++YP+P+++TAVVEPYNS+L+TH+ L+++D + L+ Sbjct: 8 HIGQAGVQIGNACWELYCKEHGILPNGQLDQNKMDD---ESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLV 201
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 9.124e-59 Identity = 109/208 (52.40%), Postives = 149/208 (71.63%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMP---------SDTSVG---ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 IGQ GIQ+GN+CWELY LEHGI+ DG++ S SVG + +DA TFF+ETG+G+ VPR++FVDLEP+VID+VR G R+L+HPEQLISGKEDAANN+ARG Y++G+E++D R++K+A+ C LQGFL+F+++ DY KK KL F +YPSP+VSTAVVEPYN++L+THS ++H+D ++ Sbjct: 9 IGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDA-RTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHSTMDHSDCVFMV 215
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55 Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 3 Query: 186 CWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGL 524 CWELY LEHGI PDG MPSDT+VG DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG EIVDLCLDRVRKLADNCTGL Sbjct: 1 CWELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.037e-50 Identity = 89/182 (48.90%), Postives = 133/182 (73.08%), Query Frame = 3 Query: 195 LYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 LYC EHGI PDG + + ++ +FFS+T G +VPR + VDLEP V++ ++TG YR+L+HP QLISGKEDAANN+ARGHYTVG+EI++ ++++R++ADNC GLQGFL++++ ++GKKSKL F++YP+P+++TAVVEPYNS+L+TH+ L+++D + L+ Sbjct: 1 LYCKEHGILPDGRLDQNRMDD---ESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLV 179
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.037e-50 Identity = 95/203 (46.80%), Postives = 136/203 (67.00%), Query Frame = 3 Query: 150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTS------VGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +IGQAG Q+GN CWEL+CLEHGI PDGT ++++ G A+N FF E +G+HVPRA+FVD EP+VIDE++TG Y L+HPE LI GKEDA++NFA+G T +++ +D +RK +NCTGLQGF ++N+V Y KK+KL I+PSP++S+ VVEPYN+VL+TH++++ + ++ Sbjct: 8 NIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMV 209
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.661e-50 Identity = 100/119 (84.03%), Postives = 102/119 (85.71%), Query Frame = 3 Query: 384 LFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 LFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKL+DNCTGLQGFLVFNAV VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL Sbjct: 1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 119
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 5.942e-42 Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 3 Query: 369 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 G+YRQ+FHPEQLI+GKEDAANN+A GHYT+G+E +DL LDR+RKLAD CTGLQGFLVF+++ V+YGKKSKLGF+IYP+PQVSTA+V+PYNS+L+TH+ LEH+D A ++ Sbjct: 20 GTYRQIFHPEQLITGKEDAANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMV 143 The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bpback to top |