CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.435e-90
Identity = 155/197 (78.68%), Postives = 173/197 (87.82%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQ GIQ+GN+CWELYCLEHGI PDG+MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEPSV+DEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFL F+AV                 VDYGKKSKLGFTIYPSPQ+STAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HLGQGGIQIGNACWELYCLEHGIQPDGSMPSDKAIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPSVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLAFHAVGGGTGSGLGRLLLERLSVDYGKKSKLGFTIYPSPQISTAVVEPYNSVLSTHSLLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.995e-90
Identity = 160/197 (81.22%), Postives = 174/197 (88.32%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAGIQVGN+ WELYCLEHGI PDG MPSD +VG   DAFNTFFSETG+G+HVPRAVF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV  X              VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV+VLL
Sbjct:    8 HIGQAGIQVGNARWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGXTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.227e-89
Identity = 153/197 (77.66%), Postives = 174/197 (88.32%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG+QVGN+CWELYCLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF++V                 VDYGKKSKLGFT+YPSPQV+TAVVEPYNSVLSTH+LLEHTDVAV+L
Sbjct:    8 HIGQAGVQVGNACWELYCLEHGIQPDGLMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.798e-89
Identity = 155/197 (78.68%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAGIQVGN+CWEL+CLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPR VF+DLEP+V DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLAD CTGLQGFLVFN+V                 VDYGKKSKLGFT+YPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVDDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 6.479e-89
Identity = 154/197 (78.17%), Postives = 171/197 (86.80%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAGIQ+GN+CWEL+CLEHGI PDG MPSD ++G   DAFNTFFSETG+ +HVPR VF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLAD CTGLQGFLVFN+V                 VDYGKKSKLGFT+YPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.461e-89
Identity = 153/197 (77.66%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG QVGN+CWEL+CLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLV++AV                 VDYGKKSKLG+T+YPSPQVSTAVVEPYNSVLSTHSLLEHTDVA +L
Sbjct:    8 HIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.461e-89
Identity = 154/197 (78.17%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAGIQVGN+CWELYCLEHGI PDG +P D + G   DAF+TFFS+TG+G+HVPRA+FVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVFNAV                 V+YGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV++LL
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQVPGDKTAGHHDDAFSTFFSQTGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILL 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.105e-88
Identity = 152/197 (77.16%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG QVGN+CWEL+CLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DE+RTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLV++AV                 VDYGKKSKLG+T+YPSPQVSTAVVEPYNSVLSTHSLLEHTDVA +L
Sbjct:    8 HIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.105e-88
Identity = 152/197 (77.16%), Postives = 173/197 (87.82%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG+QVGN+CWELYCLEHGI PDG MPS  ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF++V                 VDYGKKSKLGFT+YPSPQV+TAVVEPYNSVLSTH+LLEHTDVAV+L
Sbjct:    8 HIGQAGVQVGNACWELYCLEHGIQPDGLMPSSKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.163e-88
Identity = 154/197 (78.17%), Postives = 170/197 (86.29%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAGIQVGN+CWEL+CLEHGI PDG MPS+ ++G   DAFNTFFSETG+G+HVPR VF+DL P+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLD +RKLAD CTGLQGFLVFN+V                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPSNKTIGGGDDAFNTFFSETGTGKHVPRCVFLDLGPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDGIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVML 204
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA_EUGGR3.435e-9078.68Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA1_ANEPH9.995e-9081.22Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA1_NAEGR2.227e-8977.66Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA_OXYGR3.798e-8978.68Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA1_STYLE6.479e-8978.17Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_TRYBR8.461e-8977.66Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]
TBA3_MAIZE8.461e-8978.17Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA_TRYCR1.105e-8877.16Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA13_NAEGR1.105e-8877.16Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA2_STYLE7.163e-8878.17Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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