CF835732
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23 Identity = 63/199 (31.66%), Postives = 103/199 (51.76%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ CLEHGI DG + + G D + FF + ++PRA+ VDLEP VI+ ++ YR L++ E + + A NN+A G Y G ++VD +D + + AD L+GF++ +++ Y KK ++++P+ + S VV+PYNS+L+ L + D V+L Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 1.376e-22 Identity = 61/199 (30.65%), Postives = 104/199 (52.26%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPS-PQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ CLEHGI PDG + + G D + FF + ++PRAV +DLEP VI+ + T Y +L++ E + K A NN+A G ++ G ++ + D + + AD L+GF++ +++ + KK ++++P+ ++S VV+PYNS+L+ L + D V+L Sbjct: 10 LGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDG--QDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVL 205
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22 Identity = 61/198 (30.81%), Postives = 106/198 (53.54%), Query Frame = 3 Query: 156 GQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 GQ G QVG+ W+ CLEHGI PDGT+ + G D + FF ++ +++PRA+ +DLEP V++ + + +Y L++PE + + A NN+A G Y +I + +D + + A+ L+GF + +++ + KK ++++P+ + VS VV+PYNS+L+ L + D V+L Sbjct: 11 GQCGNQVGSQFWQQLCLEHGICPDGTLEDFATEGL--DRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVL 205
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22 Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ CLEHGI DG + + G D + FF + +PR++ +DLEP VI+ ++ YR L++ E + + A NN+A G Y G ++VD +D V + AD L+GF++ +++ Y KK ++++P+ + S VV+PYNS+L+ L + D V+L Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22 Identity = 63/201 (31.34%), Postives = 96/201 (47.76%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHP-----DGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 IG AG +G+S W + EHG+ GT P + N FF+ T S + R + +D E S I + S QL+ PE ++G E A NNFARG++T G I+D L+ R+ ++ LQGF + +++ Y + PSP +S VVEPYN++LST +L+ ++ + L Sbjct: 9 IGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQL------ERINVFFNATASKRFYARTILIDTEASTIQRLNASS--QLYRPENFVAGSESAGNNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFCL 201
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22 Identity = 61/199 (30.65%), Postives = 102/199 (51.26%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ CLEHGI DG + + G D + FF + ++PRA+ +DLEP VI+ ++ G YR L++ E + A NN+A G Y G+ + + +D + + AD L+GF++ +++ Y KK ++++P+ + S VV+PYNS+L+ L + D V+L Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22 Identity = 61/199 (30.65%), Postives = 102/199 (51.26%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ CLEHGI DG + + G D + FF + ++PRA+ +DLEP VI+ ++ G YR L++ E + A NN+A G Y G+ + + +D + + AD L+GF++ +++ Y KK ++++P+ + S VV+PYNS+L+ L + D V+L Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22 Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ C+EHGI+P+G + D +V D + FF + +VPRAV +DLEP VI+ ++ +Y L++PE + K A NN+ RG YT ++ D L+ + + AD L+GF++ +++ Y KK ++++P + VV+PYN +LS L + D V+L Sbjct: 10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVL 202
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22 Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ C+EHGI+P+G + D +V D + FF + +VPRAV +DLEP VI+ ++ +Y L++PE + K A NN+ RG YT ++ D L+ + + AD L+GF++ +++ Y KK ++++P + VV+PYN +LS L + D V+L Sbjct: 10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVL 202
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22 Identity = 63/199 (31.66%), Postives = 102/199 (51.26%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPS-PQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 +GQ G Q+G W+ CLEHGI P G + + G D + FF + ++PRAV +DLEP VI+ + Y +L++PE + K A NN+A G Y+ G ++ + D + + AD L+GF++ +++ Y KK F+++P+ ++S VV+PYNS+L+ L D V+L Sbjct: 10 LGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGL--DRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVL 205 The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bpback to top |