CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 63/199 (31.66%), Postives = 103/199 (51.76%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +     ++PRA+ VDLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G ++VD  +D + + AD    L+GF++ +++                   Y KK    ++++P+  + S  VV+PYNS+L+   L  + D  V+L
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.376e-22
Identity = 61/199 (30.65%), Postives = 104/199 (52.26%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPS-PQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  CLEHGI PDG +    + G   D  + FF +     ++PRAV +DLEP VI+ + T  Y +L++ E +   K    A NN+A G ++ G ++ +   D + + AD    L+GF++ +++                   + KK    ++++P+  ++S  VV+PYNS+L+   L +  D  V+L
Sbjct:   10 LGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDG--QDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVL 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 61/198 (30.81%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  156 GQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            GQ G QVG+  W+  CLEHGI PDGT+    + G   D  + FF ++   +++PRA+ +DLEP V++ + + +Y  L++PE +    +   A NN+A G Y    +I +  +D + + A+    L+GF + +++                   + KK    ++++P+ + VS  VV+PYNS+L+   L  + D  V+L
Sbjct:   11 GQCGNQVGSQFWQQLCLEHGICPDGTLEDFATEGL--DRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVL 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G ++VD  +D V + AD    L+GF++ +++                   Y KK    ++++P+  + S  VV+PYNS+L+   L  + D  V+L
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 63/201 (31.34%), Postives = 96/201 (47.76%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHP-----DGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            IG AG  +G+S W +   EHG+        GT P         +  N FF+ T S +   R + +D E S I  +   S  QL+ PE  ++G E A NNFARG++T G  I+D  L+  R+  ++   LQGF + +++                   Y       +   PSP +S  VVEPYN++LST +L+ ++ +   L
Sbjct:    9 IGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQL------ERINVFFNATASKRFYARTILIDTEASTIQRLNASS--QLYRPENFVAGSESAGNNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFCL 201          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 61/199 (30.65%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G Y  G+ + +  +D + + AD    L+GF++ +++                   Y KK    ++++P+  + S  VV+PYNS+L+   L  + D  V+L
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 61/199 (30.65%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G Y  G+ + +  +D + + AD    L+GF++ +++                   Y KK    ++++P+  + S  VV+PYNS+L+   L  + D  V+L
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVL 205          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  C+EHGI+P+G +  D +V    D  + FF +     +VPRAV +DLEP VI+ ++  +Y  L++PE +   K    A NN+ RG YT   ++ D  L+ + + AD    L+GF++ +++                   Y KK    ++++P    +  VV+PYN +LS   L  + D  V+L
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVL 202          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  C+EHGI+P+G +  D +V    D  + FF +     +VPRAV +DLEP VI+ ++  +Y  L++PE +   K    A NN+ RG YT   ++ D  L+ + + AD    L+GF++ +++                   Y KK    ++++P    +  VV+PYN +LS   L  + D  V+L
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVL 202          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 63/199 (31.66%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPS-PQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            +GQ G Q+G   W+  CLEHGI P G +    + G   D  + FF +     ++PRAV +DLEP VI+ +    Y +L++PE +   K    A NN+A G Y+ G ++ +   D + + AD    L+GF++ +++                   Y KK    F+++P+  ++S  VV+PYNS+L+   L    D  V+L
Sbjct:   10 LGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGL--DRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVL 205          
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBG2_ORYSJ3.621e-2331.66Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG2_DROME1.376e-2230.65Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_SCHJP1.797e-2230.81Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG2_MAIZE1.797e-2231.16Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBBP_DROME1.797e-2231.34Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBG2_ARATH2.347e-2230.65Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_ARATH2.347e-2230.65Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG2_EUPOC3.066e-2231.82Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG1_EUPOC3.066e-2231.82Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG1_DROME3.066e-2231.66Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
back to top