CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.084e-87
Identity = 153/197 (77.66%), Postives = 170/197 (86.29%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQ GIQVGN+CW+L+CLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGF+ F++V                 VDYGKKSKL FTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HIGQGGIQVGNACWDLFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVCDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLTFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.084e-87
Identity = 155/197 (78.68%), Postives = 169/197 (85.79%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG QVGN+CWELYCLEHGI PDG MPSD SVG   DAFNTFFSETG+G+HVPRAVF+DLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDLCLDRVRKLAD CTGLQGFLVF++V                 VDYGKKSKL F +YPSPQVSTAVVEPYNSVLSTHSLLEHTDVA +L
Sbjct:    8 HIGQAGTQVGNACWELYCLEHGIQPDGQMPSDKSVGYGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAFML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.930e-86
Identity = 150/197 (76.14%), Postives = 168/197 (85.28%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAGIQ+GN+CWEL+CLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPR VF+DLEP+V+DEVRTG+YR LFHPEQLISGKEDAANNFARGHYT+G+EIVDL LDR+RKLADNCTGLQGFL+FNAV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.930e-86
Identity = 149/197 (75.63%), Postives = 169/197 (85.79%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAGIQVGN+CWEL+CLEHGI PDG MPSD +  A  DAFNTFFSETG+G+HVPR VFVDLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+E++D+CLDR+RKLADNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVA++L
Sbjct:    8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKASRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.930e-86
Identity = 150/197 (76.14%), Postives = 168/197 (85.28%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAGIQ+GN+CWEL+CLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPR VF+DLEP+V+DEVRTG+YR LFHPEQLISGKEDAANNFARGHYT+G+EIVDL LDR+RKLADNCTGLQGFL+FNAV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 5.133e-86
Identity = 151/197 (76.65%), Postives = 168/197 (85.28%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG QVGN+CWELYCLEHGI+PDG MPSD SVG   DAFNTFFSET SG+HVPRA+++DLEP+VIDE+RTG+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+EIVDLCLDRVRKLAD C+GLQGFLVF++V                 VDYGKKSKL F +YPSPQVSTAVVEPYNSVLSTH LLEHTDVA +L
Sbjct:    8 HIGQAGAQVGNACWELYCLEHGINPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIYLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.704e-86
Identity = 151/197 (76.65%), Postives = 167/197 (84.77%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQAG QVGN+CWELYCLEHGI PDG MPSD SVG   DAFNTFFSET SG+HVPRA+F+DLEP+VIDE+RTG+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E+VDLCLDRVRKLAD C+GLQGFLVF++V                 VDYGKKSKL F +YPSPQVSTAVVEPYNSVLSTH LLEHTDVA +L
Sbjct:    8 HIGQAGAQVGNACWELYCLEHGIKPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIFLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.144e-85
Identity = 150/197 (76.14%), Postives = 168/197 (85.28%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            HIGQ GIQVGN+CWEL+CLEHGI PDG MPSD ++G   DAFNTFFSETG+G+HVPRAV VDLEP+V DE+RTG+YRQLFHPEQ+ISGKEDAANNFARGHYT+G+EIVDL LDR+RKLADNCTGLQGF+ F++V                 VDYGKKSKL FT+YPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV+L
Sbjct:    8 HIGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPTVCDEIRTGTYRQLFHPEQIISGKEDAANNFARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.951e-85
Identity = 148/197 (75.13%), Postives = 168/197 (85.28%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAGIQVGN+CWEL+CLEHGI PDG MP D +  A  DAFNTFFSETG+G+HVPR VFVDLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+E++D+CLDR+RKLADNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVSTAVVEPYNSVLSTHSLLEHTDVA++L
Sbjct:    8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPPDQAGRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIML 204
[Close]
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.312e-83
Identity = 142/197 (72.08%), Postives = 167/197 (84.77%), Query Frame = 3 
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQAG+Q+GN+CWELYCLEHGI PDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EI+DL LDRVRKLAD CTGLQGFLVF++                  VDYGKKSKL F+IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 204
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA_EUPOC2.084e-8777.66Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBAD_PHYPO2.084e-8778.68Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA_TOXGO3.930e-8676.14Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_PLAFK3.930e-8675.63Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_NEOCA3.930e-8676.14Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBAN_PHYPO5.133e-8676.65Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBAE_PHYPO6.704e-8676.65Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA_EUPVA1.144e-8576.14Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBA_PLAYO1.951e-8575.13Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA1C_BOVIN5.312e-8372.08Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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