CF835732
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18 Identity = 57/201 (28.36%), Postives = 102/201 (50.75%), Query Frame = 3 Query: 150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQ-LISGKEDAANNFARGHYTVGR--EIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY--PSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737 ++GQ G Q+G+ ++ C EHGI PDG++ ++ + D + FF + ++VPR++ +DLEP V+D +RT +R ++PE +I A N++A G+YT + EI ++ + + ++C L+GF +++ Y K F++ +P V VV PYNS+L+ L+ V+ Sbjct: 9 NVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFID---DRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKENPDV---VVSPYNSILTLRRLITECQSVVV 199
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18 Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 504 ADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 AD C+GLQGFL+F++ VDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++ Sbjct: 1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 79
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3 Query: 351 IDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTD 725 +D VR+G + Q+ P+ I G+ A NN+A+G YT G E+ + +D VRK A++C LQGF + +++ +Y + F+I PSP+VS VVEPYN+ LS H L+E+ D Sbjct: 1 MDSVRSGPFGQVLRPDNFIFGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMVTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENAD 125
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 507 DNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 D CTGLQGFL+F++ VDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LE +D A ++ Sbjct: 2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCAFMV 79
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16 Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDG-TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737 +GQ G VG W EHGI DG + +D D N FF + + ++VPRA+ +DLEP+ + +V++ S+ LF+P E A N+++ G Y G + D +D + + D+ +GF + ++V Y K ++++PS Q S VV PYN+VL+ L E D +++ Sbjct: 10 VGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLTLRRLCEDADASII 204
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16 Identity = 59/201 (29.35%), Postives = 98/201 (48.76%), Query Frame = 3 Query: 150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVID-EVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVST-AVVEPYNSVLSTHSLLEHTDVAVLL 740 H+GQ G Q+ + W+ EHGI+ G + + +D + F + +VPRAV VDLEP VI+ +++ ++ LF+ + + A NN+A G Y G+E+ + +D + + A+N L G L ++V + KK ++++ + ST VV PYN VLS L+E+ D V+L Sbjct: 11 HVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVL 207
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16 Identity = 61/199 (30.65%), Postives = 95/199 (47.74%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKED--AANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737 +GQ G QVG W EHGI DG P D +V D N FF + + PRA+ DLEPS I +V+ + F+ + KE+ A N ++ G Y G E D ++ + K D +GF + ++V Y KK ++++PS + S VV+PYN++L+ L++++D +VL Sbjct: 10 VGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANV-VREDDTNVFFRQNDHNRFTPRALLYDLEPSAIGDVQ-NCFPGFFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILTLRRLIDNSDASVL 204
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3 Query: 504 ADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 AD C+GLQGFLVF++ V+Y KKSKL F++YP QVSTAVVEPYNS+L+TH+ LEH+D + ++ Sbjct: 1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMV 79
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15 Identity = 57/196 (29.08%), Postives = 88/196 (44.90%), Query Frame = 3 Query: 156 GQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQ--LISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737 GQ G VG W EH I DG S D FF E + PRA+ +D EPSVI +V ++R F P + S A N++A G Y +G D L+++ K D+ +GF + ++V Y KK ++++P+ + S VV+ YN++L+ L+E +D V+ Sbjct: 11 GQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVV 203
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15 Identity = 56/205 (27.32%), Postives = 91/205 (44.39%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSET-----GSGQHVP---------RAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTD 725 +GQ G Q+G W+L EH + G +A ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G D L++ RK A++C LQ F + +++ ++ + + +IYPS + + PYNS+L+ L EH D Sbjct: 9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILAMKELNEHAD 204 The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bpback to top |