CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 57/201 (28.36%), Postives = 102/201 (50.75%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQ-LISGKEDAANNFARGHYTVGR--EIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY--PSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737
            ++GQ G Q+G+  ++  C EHGI PDG++ ++  +    D  + FF +    ++VPR++ +DLEP V+D +RT  +R  ++PE  +I     A N++A G+YT  +  EI ++    + +  ++C  L+GF   +++                   Y K     F++    +P V   VV PYNS+L+   L+      V+
Sbjct:    9 NVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFID---DRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKENPDV---VVSPYNSILTLRRLITECQSVVV 199          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  504 ADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            AD C+GLQGFL+F++                  VDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMV 79          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  351 IDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTD 725
            +D VR+G + Q+  P+  I G+  A NN+A+G YT G E+ +  +D VRK A++C  LQGF + +++                  +Y  +    F+I PSP+VS  VVEPYN+ LS H L+E+ D
Sbjct:    1 MDSVRSGPFGQVLRPDNFIFGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMVTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENAD 125          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  507 DNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            D CTGLQGFL+F++                  VDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LE +D A ++
Sbjct:    2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCAFMV 79          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDG-TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737
            +GQ G  VG   W     EHGI  DG +  +D       D  N FF +  + ++VPRA+ +DLEP+ + +V++ S+  LF+P       E   A N+++ G Y  G +  D  +D + +  D+    +GF + ++V                   Y K     ++++PS Q S  VV PYN+VL+   L E  D +++
Sbjct:   10 VGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLTLRRLCEDADASII 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 59/201 (29.35%), Postives = 98/201 (48.76%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVID-EVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVST-AVVEPYNSVLSTHSLLEHTDVAVLL 740
            H+GQ G Q+  + W+    EHGI+  G    +  +   +D  +  F +     +VPRAV VDLEP VI+  +++ ++  LF+ + +        A NN+A G Y  G+E+ +  +D + + A+N   L G L  ++V                   + KK    ++++ +   ST  VV PYN VLS   L+E+ D  V+L
Sbjct:   11 HVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVL 207          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 61/199 (30.65%), Postives = 95/199 (47.74%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKED--AANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737
            +GQ G QVG   W     EHGI  DG    P D +V    D  N FF +    +  PRA+  DLEPS I +V+   +   F+   +   KE+  A N ++ G Y  G E  D  ++ + K  D     +GF + ++V                   Y KK    ++++PS + S  VV+PYN++L+   L++++D +VL
Sbjct:   10 VGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANV-VREDDTNVFFRQNDHNRFTPRALLYDLEPSAIGDVQ-NCFPGFFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILTLRRLIDNSDASVL 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  504 ADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            AD C+GLQGFLVF++                  V+Y KKSKL F++YP  QVSTAVVEPYNS+L+TH+ LEH+D + ++
Sbjct:    1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMV 79          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 57/196 (29.08%), Postives = 88/196 (44.90%), Query Frame = 3
Query:  156 GQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQ--LISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL 737
            GQ G  VG   W     EH I  DG      S     D    FF E    +  PRA+ +D EPSVI +V   ++R  F P    + S    A N++A G Y +G    D  L+++ K  D+    +GF + ++V                   Y KK    ++++P+ + S  VV+ YN++L+   L+E +D  V+
Sbjct:   11 GQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVV 203          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 56/205 (27.32%), Postives = 91/205 (44.39%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSET-----GSGQHVP---------RAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTD 725
            +GQ G Q+G   W+L   EH         +    G   +A ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    D  L++ RK A++C  LQ F + +++                  ++ +  +   +IYPS +    +  PYNS+L+   L EH D
Sbjct:    9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILAMKELNEHAD 204          
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBG_ENTHI1.575e-1828.36Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBA4_CHICK3.508e-1855.70Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
YI016_HUMAN7.814e-1837.60Putative tubulin beta chain-like protein ENSP00000... [more]
TBA8_CHICK1.741e-1755.13Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBG_CANGA1.128e-1629.29Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_CAEEL7.314e-1629.35Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_ASHGO7.314e-1630.65Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBA3_CHICK7.314e-1650.63Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBG_YEAST3.630e-1529.08Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBE_HUMAN3.630e-1527.32Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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