CF835732

Overview
NameCF835732
Unique NameCF835732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTM---PSDTSVGACHDAFNT------------------------FFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPE--QLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTD 725
            +GQ G QVG   W+    EHGI  DG+    P D +     +  N+                        FF+ + S  + PR++ +D+EPSVI   ++ S   +F+P    L +    AANN+  G Y  G E  +  L+ + +  D C  L  F +F++V                   YG K  L  F+I+PS +  S  VV+PYN++L+   L++++D
Sbjct:   10 VGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSD 228          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 3
Query:  153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSET-----GSGQHVP---------RAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTD 725
            +GQ G Q+G   W+L   EH         +    G   DA ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK A+ C  LQ F + +++                  ++ +  +    +YPS +    +  PYNS+L+   L EH D
Sbjct:    9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHAD 204          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  276 NTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740
            + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G + VD  +D V + AD    L+GF++ +++                   Y KK    ++++P+  + S  VV+PYNS+L+   L  + D  V+L
Sbjct:    1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQVETSDVVVQPYNSLLTLKRLTLNADCVVVL 157          
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4_MAIZE (Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=TUBA4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 3
Query:  150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVG 257
            HIGQAGIQVGN+CWELYCLEHGI  DG MP D ++G
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIG 43          
The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBG_CANAL4.741e-1528.38Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBE_MOUSE1.379e-1426.83Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG3_MAIZE8.941e-1429.11Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBA4_MAIZE2.435e-1177.78Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bp
CGTTCAGTAATATCAAAACACGGGGTAAAAAAAAGCTTCCCTTGGCTTCT
CTTCTTTTCATTATCTGTAAGTAATTGATCTTAAATCATAATAATATTGT
GGGGTTTCGGATTTGAAGAGAAAGAGAGATGAGGGAAATAATAAGCATTC
ATATAGGACAGGCAGGGATTCAGGTTGGGAATTCATGTTGGGAGCTTTAC
TGCCTCGAACATGGGATTCACCCTGATGGAACCATGCCCAGTGACACCTC
TGTAGGTGCTTGCCATGATGCTTTCAATACATTCTTCAGCGAGACTGGTT
CTGGGCAGCATGTGCCTAGAGCAGTATTTGTTGATCTGGAACCCAGTGTT
ATTGATGAGGTAAGAACTGGGTCTTATAGACAACTTTTTCACCCAGAGCA
ACTCATCTCTGGCAAGGAAGATGCTGCCAATAACTTTGCCAGAGGACACT
ACACAGTGGGGCGGGAAATTGTTGATCTCTGCCTTGACCGAGTAAGAAAA
CTGGCTGACAATTGTACCGGTTTGCAAGGATTTCTAGTATTTAATGCTGT
TGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTTACTTTTGGAACGCTTAT
CTGTTGATTATGGAAAGAAGTCAAAACTCGGCTTTACTATCTACCCATCT
CCTCAGGTTTCAACTGCAGTTGTTGAACCTTACAACAGTGTGCTTTCCAC
TCATTCTCTCCTTGAACACACAGATGTTGCTGTGCTTCTGG
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