CF835732
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15 Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTM---PSDTSVGACHDAFNT------------------------FFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPE--QLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTD 725 +GQ G QVG W+ EHGI DG+ P D + + N+ FF+ + S + PR++ +D+EPSVI ++ S +F+P L + AANN+ G Y G E + L+ + + D C L F +F++V YG K L F+I+PS + S VV+PYN++L+ L++++D Sbjct: 10 VGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSD 228
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14 Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 3 Query: 153 IGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSET-----GSGQHVP---------RAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTD 725 +GQ G Q+G W+L EH + G DA ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G + L+++RK A+ C LQ F + +++ ++ + + +YPS + + PYNS+L+ L EH D Sbjct: 9 VGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHAD 204
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14 Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 276 NTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLL 740 + FF + +PR++ +DLEP VI+ ++ YR L++ E + + A NN+A G Y G + VD +D V + AD L+GF++ +++ Y KK ++++P+ + S VV+PYNS+L+ L + D V+L Sbjct: 1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQVETSDVVVQPYNSLLTLKRLTLNADCVVVL 157
BLAST of CF835732 vs. ExPASy Swiss-Prot
Match: TBA4_MAIZE (Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=TUBA4 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11 Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 3 Query: 150 HIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVG 257 HIGQAGIQVGN+CWELYCLEHGI DG MP D ++G Sbjct: 8 HIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIG 43 The following BLAST results are available for this feature:
BLAST of CF835732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835732 ID=CF835732; Name=CF835732; organism=Citrus sinensis; type=EST; length=741bpback to top |