CF835733

Overview
NameCF835733
Unique NameCF835733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.279e-54
Identity = 99/124 (79.84%), Postives = 110/124 (88.71%), Query Frame = -1
Query:  251 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD-DDNEGED 619
            KDVN A+A IKTKR +QFVDWCPTGFK GINYQPPTVVPG DLA+V RAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEEVG D  D +D EG D
Sbjct:  326 KDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGMDSADGEDIEGGD 449          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.670e-54
Identity = 96/116 (82.76%), Postives = 108/116 (93.10%), Query Frame = -1
Query:  272 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD 619
            KDVN A+A IKT+R++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +  D
Sbjct:  201 KDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGRNSAD 316          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 4.859e-54
Identity = 100/125 (80.00%), Postives = 111/125 (88.80%), Query Frame = -1
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD-DDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+ HKFDLMY+K AFVHWYVGEGMEEGEFSEAREDLAALEKD EEVG D V+ +  EGE Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEKDCEEVGVDSVEAEAEEGEAY 450          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.414e-53
Identity = 96/116 (82.76%), Postives = 108/116 (93.10%), Query Frame = -1
Query:  272 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD 619
            KDVN +VA IKTK+ +QFVDWCPTGFKCGINYQPPTVVP GDLA+V RAVCMISN+TA++EVFSRI+ KFDLMYSKRAFVHWYVGEGMEEGEF+EARED+AALEKDYEEVG++  D
Sbjct:  326 KDVNGSVAAIKTKKTIQFVDWCPTGFKCGINYQPPTVVPDGDLAKVDRAVCMISNSTAISEVFSRINKKFDLMYSKRAFVHWYVGEGMEEGEFNEAREDMAALEKDYEEVGSESQD 441          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.666e-52
Identity = 93/123 (75.61%), Postives = 107/123 (86.99%), Query Frame = -1
Query:  251 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGED 619
            KDVN A+A IKT R++QFVDWCPTGFK GINYQPP   PGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYV EGMEEGEF+EAREDLAALEKDY+EV  D  +D+NE  D
Sbjct:  323 KDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDYDEVATDLFEDENEAGD 445          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.482e-52
Identity = 93/124 (75.00%), Postives = 108/124 (87.10%), Query Frame = -1
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 619
            KDVN AV++I+TKR +QFVDWCPTGFK G+ YQPP  VP GDLA+V RAVCM+SN T++AE +SR+DHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D ++ +   E+Y
Sbjct:  326 KDVNCAVSSIRTKRTIQFVDWCPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGQDSIEGEIMEEEY 449          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.548e-52
Identity = 94/126 (74.60%), Postives = 106/126 (84.13%), Query Frame = -1
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD--DDNEGEDY 619
            KDV  ++A +KTKR +QFVDWCPTGFK GINYQPPTVVPG DLA+V RAVCM+SN TA+AE ++R+DHK DLMY+KRAFVHWYVGEGMEE +FSEAREDLA LEKDYEEVG D  D  DD E  DY
Sbjct:  326 KDVTASIANVKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEGMEERQFSEAREDLATLEKDYEEVGIDTADGEDDEEANDY 451          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.948e-51
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = -1
Query:  254 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGE 619
            KDV+ AVAT+KTKR +QFVDWCPTGFK GI YQPP  VP GDLA+V RAVCM+SN TA+AE +S + HKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEV AD  + D  GE
Sbjct:  326 KDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVAADSAEGDEGGE 447          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 90/124 (72.58%), Postives = 107/124 (86.29%), Query Frame = -1
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 619
            K+ + AVAT+KTKR +QFVDWCPTGFK GI YQPP  VP GDLA+V RAVCM+SN TA++E +S +DHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEV +D ++++ E  +Y
Sbjct:  326 KETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVASDSLEEEGEEVEY 449          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.911e-50
Identity = 90/124 (72.58%), Postives = 105/124 (84.68%), Query Frame = -1
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 619
            KD N AVA IKTKR +QFVDWCPTGFK GI  +PP  VPGGDLA+V+R++CM+SN TA++  +SR+DHKFDL+YSKRAFVHWYVGEGMEEGEFSEAR+DLAALEKDYEEVG D  D + E  +Y
Sbjct:  325 KDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDLAALEKDYEEVGMDSADAEEEAAEY 448          
The following BLAST results are available for this feature:
BLAST of CF835733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA1_HOMAM1.279e-5479.84Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA3_CHICK1.670e-5482.76Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA3E_HUMAN4.859e-5480.00Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBAN_GUITH1.414e-5382.76Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA2_CHICK2.666e-5275.61Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_PNECA3.482e-5275.00Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA2_HOMAM4.548e-5274.60Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA_MYCGR2.948e-5177.05Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA1_EMENI1.120e-5072.58Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBAA_SCHCO1.911e-5072.58Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835733 ID=CF835733; Name=CF835733; organism=Citrus sinensis; type=EST; length=619bp
TTTTTGGGCGCACAAGGAAGTGATTTTATTAGACAGTGAGATGCCTCATT
TCTGAGAATGAGGACTGTTGATTCTCACACTGTTCTTCTAAAACCAACAT
AATTACAAAGCCATACAACAACACAGAGGCACTTTAGAAGATCAATAGAA
TGGATAGGAATTCAGACAATACATAGCTGGAGAAAAAATATGGGAGATGA
GATAGGATAAAGAAACAGTTGCTGCTACCCTGTCAAGATTATTTTCAGTA
ATCTTCTCCCTCATTGTCATCATCAACACCGTCTGCCCCAACTTCCTCAT
AGTCTTTCTCAAGAGCAGCAAGGTCTTCTCGAGCTTCTGAGAATTCACCT
TCCTCCATGCCCTCACCTACATACCAGTGAACAAATGCTCGCTTGGAATA
CATGAGATCAAATTTATGGTCAATTCGGGAGAAAACCTCAGCCACGGCTG
TGTTGTTGCTTATCATACAAACTGCACGTTGAACTCTAGCAAGATCACCC
CCTGGTACCACTGTCGGTGGCTGGTAGTTGATACCACATTTGAAACCAGT
TGGACACCAATCAACAAACTGAACTGCCCGCTTCGTCTTGATGGTGGCAA
CCGCAGTATTGACATCCTT
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