CF835733

Overview
NameCF835733
Unique NameCF835733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.049e-48
Identity = 86/124 (69.35%), Postives = 103/124 (83.06%), Query Frame = -1
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 619
            KDVN A++++K KR + FVDWCPTGFK GINYQ P  V GGDLA+V RAVCM+SN TA+AE ++R+DHKFDLMYSKRAFVHW+VGEGMEEGEF EAR+DLAALEKDY EV  D  D + E +++
Sbjct:  329 KDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTADLEEENDEF 452          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.788e-48
Identity = 89/123 (72.36%), Postives = 103/123 (83.74%), Query Frame = -1
Query:  248 DVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 616
            D + AVAT+KTKR +QFVDWCPTGFK GI YQPP  VP GDLA+V RAVCM+SN TA+AE +S +  KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEV AD ++ ++   +Y
Sbjct:  327 DAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVAADSMEGEDVEAEY 449          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.788e-48
Identity = 86/118 (72.88%), Postives = 103/118 (87.29%), Query Frame = -1
Query:  266 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD 619
            +DV  AV +IK++R +QFVDWCPTGFK GI Y+PP  VPG  +A+V RAVCM+SN T++AE +SR+DHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D +D++
Sbjct:  330 RDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNE 447          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.051e-48
Identity = 86/111 (77.48%), Postives = 100/111 (90.09%), Query Frame = -1
Query:  287 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 619
            KDVN A+A +K++ +VQFVDWCPTGFK GINYQPP VVPGGDLARVQRAVCM+SN TA+ E ++R+DHKFDLMY+K+AF+HWY+ EGME GEF EAREDLAALEKDYEEVG
Sbjct:  333 KDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDLAALEKDYEEVG 443          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.984e-48
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = -1
Query:  254 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGE 619
            KD   AVA+IKTKR +QFVDWCPTGFK G+  + P  VPGGDLA+V R++CM+SN TA+A  ++R+D+KFDLMY KRAFVHWYVGE MEEGEFSEAREDLAALEKDYEEVG D  D + EGE
Sbjct:  324 KDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLSNTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDLAALEKDYEEVGTDSADAEEEGE 445          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.159e-47
Identity = 87/124 (70.16%), Postives = 103/124 (83.06%), Query Frame = -1
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 619
            +DV  AV TIK KR +QFVDWCPTGFK GI  +PP  + G ++A+V RAVCM+SN T++AE +SR+DHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D ++ D   E+Y
Sbjct:  326 RDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEVDYMEEEY 449          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.674e-46
Identity = 87/123 (70.73%), Postives = 100/123 (81.30%), Query Frame = -1
Query:  248 DVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 616
            D + AVA++KTKR +QFVDWCPTGFK GI YQPP  VP GDLA+V RAVCM+SN TA+AE +S +  KFDLMYSKRAFVHWYVGEGMEEGEFSEARE LAALE DYEEV AD ++ +    +Y
Sbjct:  327 DAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREVLAALEADYEEVAADSMEGEEVEAEY 449          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.674e-46
Identity = 87/123 (70.73%), Postives = 100/123 (81.30%), Query Frame = -1
Query:  248 DVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 616
            D + AVAT+KTKR +QFVDWCPTGFK GI YQ P  VP GDLA+V RAVCM+SN TA+AE +S +  KFDLM+SKRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEV  D + D+    +Y
Sbjct:  327 DAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVATDSMGDEELEAEY 449          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.308e-46
Identity = 84/120 (70.00%), Postives = 97/120 (80.83%), Query Frame = -1
Query:  260 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE 619
            +DV TAVA +K K+ VQ VDWCPTGFK GI Y+PPT  P   L+ V RAVCM+SN TA+A+ + RID KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY EVGAD   D+ E
Sbjct:  328 RDVQTAVAQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLSSVSRAVCMLSNTTAIADAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEVGADSYADEEE 447          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.085e-45
Identity = 84/120 (70.00%), Postives = 97/120 (80.83%), Query Frame = -1
Query:  260 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE 619
            +DV  AVA +K+K+ VQ VDWCPTGFK GI YQPPT + G +LA   RAVCM+SN TA+AE + RID KFDLMYSKRAFVHWYVGEGMEEGEF+EAREDLAALE+DY EVG D   ++ E
Sbjct:  327 RDVQNAVAQVKSKKTVQLVDWCPTGFKIGICYQPPTAIKGSELASASRAVCMLSNTTAIAEAWRRIDRKFDLMYSKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEVGTDSFPEEEE 446          
The following BLAST results are available for this feature:
BLAST of CF835733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA8_CAEEL1.049e-4869.35Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA2_NEUCR1.788e-4872.36Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA1_SCHPO1.788e-4872.88Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBAL3_MOUSE3.051e-4877.48Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBAB_SCHCO3.984e-4871.31Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA2_SCHPO1.159e-4770.16Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA_SORMA1.674e-4670.73Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_GIBZE1.674e-4670.73Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_ASHGO8.308e-4670.00Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA_CANAL1.085e-4570.00Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835733 ID=CF835733; Name=CF835733; organism=Citrus sinensis; type=EST; length=619bp
TTTTTGGGCGCACAAGGAAGTGATTTTATTAGACAGTGAGATGCCTCATT
TCTGAGAATGAGGACTGTTGATTCTCACACTGTTCTTCTAAAACCAACAT
AATTACAAAGCCATACAACAACACAGAGGCACTTTAGAAGATCAATAGAA
TGGATAGGAATTCAGACAATACATAGCTGGAGAAAAAATATGGGAGATGA
GATAGGATAAAGAAACAGTTGCTGCTACCCTGTCAAGATTATTTTCAGTA
ATCTTCTCCCTCATTGTCATCATCAACACCGTCTGCCCCAACTTCCTCAT
AGTCTTTCTCAAGAGCAGCAAGGTCTTCTCGAGCTTCTGAGAATTCACCT
TCCTCCATGCCCTCACCTACATACCAGTGAACAAATGCTCGCTTGGAATA
CATGAGATCAAATTTATGGTCAATTCGGGAGAAAACCTCAGCCACGGCTG
TGTTGTTGCTTATCATACAAACTGCACGTTGAACTCTAGCAAGATCACCC
CCTGGTACCACTGTCGGTGGCTGGTAGTTGATACCACATTTGAAACCAGT
TGGACACCAATCAACAAACTGAACTGCCCGCTTCGTCTTGATGGTGGCAA
CCGCAGTATTGACATCCTT
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