CF835733
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13 Identity = 33/120 (27.50%), Postives = 64/120 (53.33%), Query Frame = -1 Query: 260 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE 619 K+V + ++ K + FV+W P + + PP ++ + + N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + + E Sbjct: 324 KEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDASISEGEE 435
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13 Identity = 33/120 (27.50%), Postives = 63/120 (52.50%), Query Frame = -1 Query: 260 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE 619 K+V + ++ K FV+W P + + PP ++ + + N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + + E Sbjct: 324 KEVEDQMRNVQQKNVSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEASISEGEE 435
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12 Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = -1 Query: 254 DVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGADGVDDDNEGE 616 + +V ++ K + FV+W P + PP P +A ++N+T + E+F R +F LM+ +RAF+HWY GEGM+ EF+EA +DL + + Y+E + + D EGE Sbjct: 329 EAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESNTQDLISEYQQYQEATVEEEEADIEGE 444
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12 Identity = 39/121 (32.23%), Postives = 60/121 (49.59%), Query Frame = -1 Query: 257 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEG 619 ++V+ + ++ K FVDW P K I PP ++ + I N TA+ +F R+ M ++A +HWY GEGMEE EF +A+++L A+ DY A+G D G Sbjct: 323 REVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPPR--------GLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAIIDDYRS-SAEGEDSGGGG 434
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11 Identity = 35/109 (32.11%), Postives = 59/109 (54.13%), Query Frame = -1 Query: 293 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 619 ++V+ + I+ K + F DW P K + PP ++ +V NNTAV E+ R+ +F + ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 324 REVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 423
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11 Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = -1 Query: 341 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEF 619 K+V+ + ++ K + FV+W P K + PP ++ A I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF Sbjct: 324 KEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408 The following BLAST results are available for this feature:
BLAST of CF835733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 376
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835733 ID=CF835733; Name=CF835733; organism=Citrus sinensis; type=EST; length=619bpback to top |