CF835733

Overview
NameCF835733
Unique NameCF835733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 33/120 (27.50%), Postives = 64/120 (53.33%), Query Frame = -1
Query:  260 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE 619
            K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++     + +  E
Sbjct:  324 KEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDASISEGEE 435          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 33/120 (27.50%), Postives = 63/120 (52.50%), Query Frame = -1
Query:  260 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE 619
            K+V   +  ++ K    FV+W P   +  +   PP          ++ +   + N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++     + +  E
Sbjct:  324 KEVEDQMRNVQQKNVSYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEASISEGEE 435          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = -1
Query:  254 DVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGADGVDDDNEGE 616
            +   +V  ++ K +  FV+W P      +   PP   P        +A   ++N+T + E+F R   +F LM+ +RAF+HWY GEGM+  EF+EA    +DL +  + Y+E   +  + D EGE
Sbjct:  329 EAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESNTQDLISEYQQYQEATVEEEEADIEGE 444          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 39/121 (32.23%), Postives = 60/121 (49.59%), Query Frame = -1
Query:  257 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEG 619
            ++V+  +  ++ K    FVDW P   K  I   PP          ++ +   I N TA+  +F R+      M  ++A +HWY GEGMEE EF +A+++L A+  DY    A+G D    G
Sbjct:  323 REVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPPR--------GLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAIIDDYRS-SAEGEDSGGGG 434          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 35/109 (32.11%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  293 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 619
            ++V+  +  I+ K +  F DW P   K  +   PP          ++ +V    NNTAV E+  R+  +F   + ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  324 REVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 423          
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = -1
Query:  341 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEF 619
            K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF
Sbjct:  324 KEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408          
The following BLAST results are available for this feature:
BLAST of CF835733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBB_BOTFU5.435e-1327.50Tubulin beta chain OS=Botryotinia fuckeliana GN=tu... [more]
TBB_ERYGR7.099e-1327.50Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB2_SUIBO1.581e-1232.26Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBBP_DROME6.009e-1232.23Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBB4Q_HUMAN1.339e-1132.11Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB3_SOYBN3.895e-1133.33Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835733 ID=CF835733; Name=CF835733; organism=Citrus sinensis; type=EST; length=619bp
TTTTTGGGCGCACAAGGAAGTGATTTTATTAGACAGTGAGATGCCTCATT
TCTGAGAATGAGGACTGTTGATTCTCACACTGTTCTTCTAAAACCAACAT
AATTACAAAGCCATACAACAACACAGAGGCACTTTAGAAGATCAATAGAA
TGGATAGGAATTCAGACAATACATAGCTGGAGAAAAAATATGGGAGATGA
GATAGGATAAAGAAACAGTTGCTGCTACCCTGTCAAGATTATTTTCAGTA
ATCTTCTCCCTCATTGTCATCATCAACACCGTCTGCCCCAACTTCCTCAT
AGTCTTTCTCAAGAGCAGCAAGGTCTTCTCGAGCTTCTGAGAATTCACCT
TCCTCCATGCCCTCACCTACATACCAGTGAACAAATGCTCGCTTGGAATA
CATGAGATCAAATTTATGGTCAATTCGGGAGAAAACCTCAGCCACGGCTG
TGTTGTTGCTTATCATACAAACTGCACGTTGAACTCTAGCAAGATCACCC
CCTGGTACCACTGTCGGTGGCTGGTAGTTGATACCACATTTGAAACCAGT
TGGACACCAATCAACAAACTGAACTGCCCGCTTCGTCTTGATGGTGGCAA
CCGCAGTATTGACATCCTT
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