CF835733

Overview
NameCF835733
Unique NameCF835733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGEDY 619
            KDVN ++ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+V RAVCMISN+TA+AEVFSR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +  + + E E Y
Sbjct:  326 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETAEGEGEEEGY 449
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 104/122 (85.25%), Postives = 112/122 (91.80%), Query Frame = -1 
Query:  254 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGE 619
            KDVN AVATIKTKR +QFVDW PTGFKCGINYQPPTVVPGGDLA+V RAVCMISN+TA+AEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +  + + E E
Sbjct:  326 KDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETAEGEGEEE 447
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  287 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 412
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1A_RAT (Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1A_PANTR (Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1A_MOUSE (Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.753e-57
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.595e-57
Identity = 103/125 (82.40%), Postives = 114/125 (91.20%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEG-EDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D  D + EG E+Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY 450
The following BLAST results are available for this feature:
BLAST of CF835733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA1B_BOVIN2.108e-5780.95Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]
TBA_TETTH2.753e-5782.26Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_EUPOC2.753e-5785.25Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA1_CHICK2.753e-5780.95Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBA1A_RAT2.753e-5780.95Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tub... [more]
TBA1A_PANTR2.753e-5780.95Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1... [more]
TBA1A_MOUSE2.753e-5780.95Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a P... [more]
TBA1A_HUMAN2.753e-5780.95Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
TBA1A_CRIGR2.753e-5780.95Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA3_DROME3.595e-5782.40Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835733 ID=CF835733; Name=CF835733; organism=Citrus sinensis; type=EST; length=619bp
TTTTTGGGCGCACAAGGAAGTGATTTTATTAGACAGTGAGATGCCTCATT
TCTGAGAATGAGGACTGTTGATTCTCACACTGTTCTTCTAAAACCAACAT
AATTACAAAGCCATACAACAACACAGAGGCACTTTAGAAGATCAATAGAA
TGGATAGGAATTCAGACAATACATAGCTGGAGAAAAAATATGGGAGATGA
GATAGGATAAAGAAACAGTTGCTGCTACCCTGTCAAGATTATTTTCAGTA
ATCTTCTCCCTCATTGTCATCATCAACACCGTCTGCCCCAACTTCCTCAT
AGTCTTTCTCAAGAGCAGCAAGGTCTTCTCGAGCTTCTGAGAATTCACCT
TCCTCCATGCCCTCACCTACATACCAGTGAACAAATGCTCGCTTGGAATA
CATGAGATCAAATTTATGGTCAATTCGGGAGAAAACCTCAGCCACGGCTG
TGTTGTTGCTTATCATACAAACTGCACGTTGAACTCTAGCAAGATCACCC
CCTGGTACCACTGTCGGTGGCTGGTAGTTGATACCACATTTGAAACCAGT
TGGACACCAATCAACAAACTGAACTGCCCGCTTCGTCTTGATGGTGGCAA
CCGCAGTATTGACATCCTT
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