CF835748

Overview
NameCF835748
Unique NameCF835748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 51/162 (31.48%), Postives = 75/162 (46.30%), Query Frame = -2
Query:  307 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANEL-----ADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQ 777
            T GL     ++L R+ +Y  AQ LG+     L+ A          GG   +     A G      +A E + TF L++ V++    +R A    V  L PL +G  V    LA  P +G  +NPARS G A+   +   W D W++WVGP IG  +A   ++
Sbjct:   86 TLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALT--------GGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGE---WADHWIYWVGPLIGGPLAGLVYE 232          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            T GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    ++ +L
Sbjct:   67 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            T GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    ++ +L
Sbjct:   67 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            T GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    ++ +L
Sbjct:   67 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            T GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    ++ +L
Sbjct:   67 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = -2
Query:  301 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 777
            T  L +   ++L R+ +Y+ AQ  G+     L++          GG A   + LADG     G+AAE + TF L+  + +   DP+R+A     P+L  L +G       +A   +TG  +NPARS G A+   +   W   W++WVGP  G  +A   ++ +
Sbjct:   91 TLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLT-------GGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANT----VAGGALTGASMNPARSFGPALATGE---WAHHWVYWVGPLAGGPLAVVAYELL 239          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 46/158 (29.11%), Postives = 76/158 (48.10%), Query Frame = -2
Query:  307 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQ 777
            T G+ +   ++ +RA++Y+ AQ L +     L++       T      + L  G     GL  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARS G A+       W + W++W+GP +G ++A F ++
Sbjct:   95 TVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTP----VHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGPLLGGSLAGFVYE 240          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: AQPZ2_AGRT5 (Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 52/157 (33.12%), Postives = 74/157 (47.13%), Query Frame = -2
Query:  319 GLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            GL +A +      V Y++AQ  GAI       V A  K+     G  +N   +    GYS    L  EII T   +  +  +T  +  A        AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    WLFW+ P +G A  A
Sbjct:   69 GLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPIVGGAAGA 218          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11
Identity = 47/165 (28.48%), Postives = 77/165 (46.67%), Query Frame = -2
Query:  286 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 777
            T  L +   V+L R+ +Y+ AQ L + +   L++       T      + LA+G     G+ AE + TF L++ +++   DP++      +P   PL  G  V    +A   ++G  +NPARS G AV       W   W++WVGP  G  +A   ++    A A
Sbjct:   86 TLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATP----VHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL-----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASG---VWTHHWVYWVGPLAGGPLAVLVYECCFMAAA 238          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = -2
Query:  274 VSLVRAVMYMVAQCLGAISGVGLVKAF--QKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 750
            ++LV  + Y V+Q LG + G  L KA   ++ ++   G     + +       L AEII T +L   V      +++        LAP  IGFAV +  LA  P++G  +NPAR+ G AV+ N    W+  W++W+GP +   +     +  +  G  + +
Sbjct:  105 LNLVMLLPYWVSQLLGGMLGAALAKAVSPEERFWNASGAAFVTVQEQGQVAGALVAEIILTTLLALAVCMGAINEKTKGP-----LAPFSIGFAVTVDILAGGPVSGGCMNPARAFGPAVVANH---WNFHWIYWLGPLLAGLLVGLLIRCFIGDGKTRLI 257          
The following BLAST results are available for this feature:
BLAST of CF835748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
TIP43_ORYSJ8.222e-1331.48Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
AQPZ_SHIFL5.329e-1229.59Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI5.329e-1229.59Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]
AQPZ_ECOL65.329e-1229.59Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO575.329e-1229.59Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
TIP42_ORYSJ6.960e-1230.06Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE9.091e-1229.11Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
AQPZ2_AGRT51.187e-1133.12Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain... [more]
TIP43_MAIZE2.645e-1128.48Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
AQP8_HUMAN4.512e-1128.57Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835748 ID=CF835748; Name=CF835748; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTAAAAANTGAATTCTAAGGAAAGTGCTTGAAAACAACACAGGG
CCATTTACAAAAAAGCCCCTCATTGTCTAAGAGACTTTTTGCCTACAACT
CCTTGAAAGCACAAATCACACCCCCCTCATTATTCACTTTTTGAAACTTA
ACACACCTCTACTCCTTCCCAGTTTTTTCTTTCCAATTTTAAATCATTAA
CCCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACA
CGGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAA
GATGAATTGGTGGTAGAAAGCTGCAATTGCTGCACCAATGAAGGGTCCAA
CCCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACA
GCGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGAT
TGTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCA
AAACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAG
AAGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCC
AACGCCGGTGCTGTACCCATCGGCCAGCTCGTTGGCCCCACCTCCGTACC
TTGTGTAGTAAGATTTTTGGAAAGCCTTGACCAACCCAACACCGGAGATA
GCACCAAGGCACTGCGCCACCATGTACATCACAGCACGGACCAACGACAC
CTTGCGGGCCAAGAATAGTCCGAACGTC
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