CF835748

Overview
NameCF835748
Unique NameCF835748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:483..1261. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.090e-69
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  118 TFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.057e-68
Identity = 121/162 (74.69%), Postives = 141/162 (87.04%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGLFLARK+SL RA+ Y++ QCLGA+ G G+VK FQ+  Y   GGGAN +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+D AW+D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  121 TFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRA 282          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.168e-67
Identity = 124/162 (76.54%), Postives = 137/162 (84.57%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGLFLARK+SL RAV YMV QCLGAI G G+VK F    Y R GGGAN +  GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN + AW+D W+FWVGP IGAA+AA YHQ I+RA
Sbjct:  119 TFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.168e-67
Identity = 122/162 (75.31%), Postives = 138/162 (85.19%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQ+  Y   GGGAN +  GY+ G GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA++YN+  AW+D W+FWVGPFIGAA+AA YH  I+RA
Sbjct:  120 TFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRA 281          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 9.889e-67
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGLFLARK+SL RAV YM  QCLGAI G G+VK FQ+  Y   GGGAN +  GY+ G GL AEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA++YN+  AW D W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  120 TFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRA 281          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 7.087e-65
Identity = 118/168 (70.24%), Postives = 136/168 (80.95%), Query Frame = -2
Query:  274 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 777
            T GLF  RK+SLVR V+Y+VAQCLGAI+G G+VK   K  Y   GGGAN ++DGYS    L AEI+GTF+LVYTVFSATDPKR+ARDS +PVL PLPIGFAVF+VHLATIPITGTGINPARSLGAAV+YN+  AW D W+FWVGP IGA +AA YH+ +LR  A KAL
Sbjct:  113 TLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.579e-64
Identity = 119/162 (73.46%), Postives = 135/162 (83.33%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGLFLARK+SL RAV Y++ QCLGAI G G+VK FQ+  Y   GG  N +A GY+ G GL AEI+GTF+LVYTVFSATD KR ARDSHVP+LAPLPIGFAVF+VHLAT+ ITGTGINPARSLGAAVIYN+  AW D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  119 TFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRA 280          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.693e-64
Identity = 118/163 (72.39%), Postives = 137/163 (84.05%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ-KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGLFLARK+SL RA+ YMV Q LGAI G G+VK F+ K  +    GGAN +A GY+ G GL AEI+GTF+LVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+++NK   W+D W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  121 TFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRA 283          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.836e-64
Identity = 116/162 (71.60%), Postives = 133/162 (82.10%), Query Frame = -2
Query:  292 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 777
            TFGL LARK+SL RAV Y+V QCLGA+ G G+VKAF  + Y   GGGAN ++ GY+ G GL AE++GTFVLVYTVFSATD KR+ARDSHVP LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IY+    W   W+FWVGPF GAA+AA YHQ +LRA
Sbjct:  126 TFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRA 287          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.171e-59
Identity = 114/170 (67.06%), Postives = 130/170 (76.47%), Query Frame = -2
Query:  277 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKS-YYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI--YNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKA 777
            TF + LAR+VSL RA +Y +AQC+GA+ G GL +A      Y R+GGGANELA GYS G G+ AE++GTFVLVYTVFSATDPKR ARDSHVPVLAPLPIG AV +VHLATIPITGTGINPARSLG A++      KAW   W+FWVGPF GAA A  YH +ILR  A KA
Sbjct:  100 TFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKA 269          
The following BLAST results are available for this feature:
BLAST of CF835748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
PIP11_ARATH8.090e-6976.54Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_MAIZE1.057e-6874.69Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP1_SOLLC1.168e-6776.54Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_MAIZE1.168e-6775.31Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ9.889e-6774.07Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP27_ORYSJ7.087e-6570.24Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP11_MAIZE1.579e-6473.46Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP2_PEA2.693e-6472.39Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP16_MAIZE7.836e-6471.60Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ1.171e-5967.06Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835748 ID=CF835748; Name=CF835748; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTAAAAANTGAATTCTAAGGAAAGTGCTTGAAAACAACACAGGG
CCATTTACAAAAAAGCCCCTCATTGTCTAAGAGACTTTTTGCCTACAACT
CCTTGAAAGCACAAATCACACCCCCCTCATTATTCACTTTTTGAAACTTA
ACACACCTCTACTCCTTCCCAGTTTTTTCTTTCCAATTTTAAATCATTAA
CCCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACA
CGGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAA
GATGAATTGGTGGTAGAAAGCTGCAATTGCTGCACCAATGAAGGGTCCAA
CCCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACA
GCGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGAT
TGTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCA
AAACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAG
AAGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCC
AACGCCGGTGCTGTACCCATCGGCCAGCTCGTTGGCCCCACCTCCGTACC
TTGTGTAGTAAGATTTTTGGAAAGCCTTGACCAACCCAACACCGGAGATA
GCACCAAGGCACTGCGCCACCATGTACATCACAGCACGGACCAACGACAC
CTTGCGGGCCAAGAATAGTCCGAACGTC
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