CF835748

Overview
NameCF835748
Unique NameCF835748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.891e-17
Identity = 56/160 (35.00%), Postives = 83/160 (51.88%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            T    +   +SL RAV Y+ AQ +GA  G  L+         R   G N + +  STG  +A E++ T  LV  VF++TD ++++            IG +V + HL  I  TG  +NPARS G A+I  K   +   W+FWVGP +GA +A+  + F+L
Sbjct:   86 TLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDI-RETLGINVVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGSPATM------IGISVALGHLIGIHFTGCSMNPARSFGPAIIIGK---FTVHWVFWVGPLMGALLASLIYNFVL 235          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.470e-17
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            TF   +  ++SL RA+ Y+ AQ LGA++G  ++     +   R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L IGF++ + HL  +  TG  +NPARS   AV+    + + + W++WVGP IG A+    + FIL
Sbjct:   72 TFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA-AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVL---TRNFTNHWVYWVGPIIGGALGGLVYDFIL 223          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.226e-17
Identity = 52/160 (32.50%), Postives = 82/160 (51.25%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            TF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  + F+L
Sbjct:   72 TFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 56/162 (34.57%), Postives = 85/162 (52.47%), Query Frame = -2
Query:  307 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGL----AAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQ 777
            TFG F+   ++L+R ++Y +AQ LG++    ++K           GG    A G S GVG+      EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +G  +NPA + G AV+      W + W++W GP +G  IA   ++
Sbjct:   89 TFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLVGGGIAGLIYE 235          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = -2
Query:  304 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQF 777
            +FG  +  ++S++RAV Y +AQ LG+I    +++    +           ++ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA + G +++      W   W+FWVGP +GAA+AA  +++
Sbjct:   89 SFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRP----SGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAALVYEY 236          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  310 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 777
            TFGL +  +++++  V Y +AQ LG+ +   L+K     Y T  GG A   + +A G  +  G+  EII TF LVYTV++ A DPK+ +    +  +APL IG  V    LA  P +G  +NPARS G AV       +   W++WVGP IG  +A   +
Sbjct:   87 TFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 51/160 (31.87%), Postives = 82/160 (51.25%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            TF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  + F+L
Sbjct:   70 TFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 51/160 (31.87%), Postives = 82/160 (51.25%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            TF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  + F+L
Sbjct:   72 TFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.385e-17
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = -2
Query:  310 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 777
            TFGL +   ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV       +   W++WVGP +G  +A   +
Sbjct:   87 TFGLAVGGHITILTGILYWVAQLLGAS-----VACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLVGGGLAGLVY 231          
BLAST of CF835748 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.226e-16
Identity = 56/167 (33.53%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  298 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI-YNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 777
            TFG+ + R++S  RA +Y  AQ LGA+  V L++           GG   +  G++ G        L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+ G A++ +N    W   W++W+GP IGA +A   ++F++
Sbjct:   96 TFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRL--------ASGGMRPM--GFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWN----WRHHWVYWLGPLIGAGMAGALYEFVM 244          
The following BLAST results are available for this feature:
BLAST of CF835748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
AQP6_HUMAN1.891e-1735.00Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
MIP_RANPI2.470e-1733.75Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_CANFA3.226e-1732.50Lens fiber major intrinsic protein OS=Canis famili... [more]
TIP11_ARATH4.213e-1734.57Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIPA_PHAVU7.186e-1733.33Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP21_ARATH7.186e-1737.50Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
MIP_RAT7.186e-1731.88Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE7.186e-1731.88Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP23_MAIZE9.385e-1735.67Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP32_ORYSJ1.226e-1633.53Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835748 ID=CF835748; Name=CF835748; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTAAAAANTGAATTCTAAGGAAAGTGCTTGAAAACAACACAGGG
CCATTTACAAAAAAGCCCCTCATTGTCTAAGAGACTTTTTGCCTACAACT
CCTTGAAAGCACAAATCACACCCCCCTCATTATTCACTTTTTGAAACTTA
ACACACCTCTACTCCTTCCCAGTTTTTTCTTTCCAATTTTAAATCATTAA
CCCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACA
CGGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAA
GATGAATTGGTGGTAGAAAGCTGCAATTGCTGCACCAATGAAGGGTCCAA
CCCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACA
GCGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGAT
TGTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCA
AAACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAG
AAGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCC
AACGCCGGTGCTGTACCCATCGGCCAGCTCGTTGGCCCCACCTCCGTACC
TTGTGTAGTAAGATTTTTGGAAAGCCTTGACCAACCCAACACCGGAGATA
GCACCAAGGCACTGCGCCACCATGTACATCACAGCACGGACCAACGACAC
CTTGCGGGCCAAGAATAGTCCGAACGTC
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