CF835749

Overview
NameCF835749
Unique NameCF835749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD + + D   C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGA+ GV LVK FQ S+Y RYGGGANELA GYS G
Sbjct:   55 TVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKG 167          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.499e-45
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  395 SVIGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD  A   D  C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVKAFQ +Y+ RYGGGAN LA GYS G
Sbjct:   61 TVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRG 173          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.264e-45
Identity = 90/113 (79.65%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  395 SVIGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD  A   D  C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVKAFQ +Y+ RYGGGAN LA GYS G
Sbjct:   61 TVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLAAGYSKG 173          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.272e-45
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD A +     C GVG+LGIAWAFGGMIF+LVYCTAG+SGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVK FQ ++Y RYGGGANEL+ GYS G
Sbjct:   56 TVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKG 168          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.240e-44
Identity = 89/113 (78.76%), Postives = 95/113 (84.07%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD A N     C GVG+LGIAWAFGGMIF+LVYCTAG+SGGHINPAVT GLFLARKVSLVRA++YM AQCLGAI GV LVK FQ S Y RYGGGANELA GYSTG
Sbjct:   58 TVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTG 170          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.116e-44
Identity = 86/111 (77.48%), Postives = 94/111 (84.68%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIG+KSQTD       CA VG+LGI+WAFGGMIF+LVYCTAGISGGHINPAVTFGLFLA KVSLVRAV YMVAQCLGA  GVGLVK FQ +YY RYGGGAN L+DGY+ G
Sbjct:   57 TVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGANMLSDGYNVG 167          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.055e-43
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK QTD + +     C+GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++YM AQ LGAI GV LVK FQ  +Y RYGGGANE++ GYSTG
Sbjct:   60 TVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTG 172          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 88/111 (79.28%), Postives = 94/111 (84.68%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIG+K+QT P      C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL RAV YMVAQCLGAI GVGLVKAF  + Y R GGGAN +ADGYSTG
Sbjct:   55 TVIGHKNQTGP------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTG 159          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 82/114 (71.93%), Postives = 94/114 (82.46%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDG---CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            ++IGYK Q+D    + G   C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSLVRA++YM+AQC GAI G GL K FQKS+Y RYGGG N ++DGY+ G
Sbjct:   59 TIIGYKRQSDT--KIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKG 170          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.284e-41
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIG+K QT P      C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA+ YM+AQCLGAI GVG VKAF K+ Y   GGGAN +ADGYS G
Sbjct:   57 TVIGHKKQTGP------CDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKG 161          
The following BLAST results are available for this feature:
BLAST of CF835749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PIP25_ORYSJ1.914e-4577.88Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP21_MAIZE2.499e-4580.53Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP21_ORYSJ3.264e-4579.65Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP25_MAIZE7.272e-4576.99Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP24_ORYSJ1.240e-4478.76Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP26_ARATH2.116e-4477.48Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP26_MAIZE3.055e-4376.11Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP28_ARATH5.211e-4379.28Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP27_MAIZE5.762e-4271.93Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP27_ARATH1.284e-4176.58Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835749 ID=CF835749; Name=CF835749; organism=Citrus sinensis; type=EST; length=727bp
TTTTGATACACAATAGTTTTTATTTATTAATTAAAGAAGACAAAGTACAT
GAACGCAAACAAAGATAATCTCTTGTATAAGAGATTTTTGTAAGTGAACT
GAACTAAATTGACACTCTTATAATTGATAGATAATAACTGTACCCATCTT
TTTATTTAATTATATATATCATCATCCAGATTGCAGACACTTACCCATAA
TAATCAGGATTTCTCCCATATTGAGGAATAACAATAAGATCAAGATTGTC
ATTCCCAACATCATCATCAGCAATACTGGAAGGGGGGAGTAAGTAACCTT
CTGACGGATCGCTCATACCTGCGCCAGGAAGAGTTTTCATATTCTTCAAG
TCAGAAAAGATATTTGCTAGCTTCGAGTGCACTATATTAAAAAATCTGTC
ATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGC
CGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTG
TCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCA
GTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGT
GATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGGTTGG
TCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAAC
GAGCTGGCCGATGGGTACAGCACCGGC
back to top