CF835749

Overview
NameCF835749
Unique NameCF835749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12881 contig Csv1_Contig12881:890..1616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 82/111 (73.87%), Postives = 94/111 (84.68%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +VIGYK +TDP      CA VG+LGIAW+FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+RA++YM+AQC GAI GVGLVKAF K  Y ++GGGAN +A GY+ G
Sbjct:   59 TVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKG 163          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.569e-39
Identity = 86/133 (64.66%), Postives = 98/133 (73.68%), Query Frame = 2
Query:  332 SFHILQVRKDIC*LRVHYIK-KSVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            SF+   + + I  L   YI   +VIGYK Q+    + D C GVG LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKVS++RAVMY+VAQCLG I GVG+VK   K  Y   GGGAN +A GYSTG
Sbjct:   35 SFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTG 163          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.795e-35
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYS 721
            +VIGYK+Q      VD C GVG LG+AW+FG  IFVLVYCT G+SGGHINPAVT GLF  RK+SLVR V+Y+VAQCLGAI+G G+VK   K  Y   GGGAN ++DGYS
Sbjct:   63 TVIGYKNQR---ATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYS 168          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.345e-35
Identity = 71/94 (75.53%), Postives = 77/94 (81.91%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G
Sbjct:   83 CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKG 176          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35
Identity = 71/94 (75.53%), Postives = 77/94 (81.91%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQK  Y   GGGAN +A GY+ G
Sbjct:   84 CATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKG 177          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G
Sbjct:   82 CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKG 175          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.223e-35
Identity = 71/94 (75.53%), Postives = 77/94 (81.91%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G
Sbjct:   82 CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKG 175          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 69/100 (69.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:  428 AKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAI G G+VK FQ+  Y   GGGAN +A GY+ G
Sbjct:   82 SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKG 181          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 70/100 (70.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:  428 AKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ+  Y   GGGAN +A GY+ G
Sbjct:   79 SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKG 178          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.164e-34
Identity = 70/94 (74.47%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G
Sbjct:   82 CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKG 175          
The following BLAST results are available for this feature:
BLAST of CF835749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PIP1_ATRCA1.676e-4173.87Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ1.569e-3964.66Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ1.795e-3565.14Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH2.345e-3575.53Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP12_ORYSJ3.999e-3575.53Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH3.999e-3575.53Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP13_ARATH5.223e-3575.53Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP13_MAIZE8.910e-3569.00Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_ORYSJ8.910e-3570.00Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP11_VICFA1.164e-3474.47Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835749 ID=CF835749; Name=CF835749; organism=Citrus sinensis; type=EST; length=727bp
TTTTGATACACAATAGTTTTTATTTATTAATTAAAGAAGACAAAGTACAT
GAACGCAAACAAAGATAATCTCTTGTATAAGAGATTTTTGTAAGTGAACT
GAACTAAATTGACACTCTTATAATTGATAGATAATAACTGTACCCATCTT
TTTATTTAATTATATATATCATCATCCAGATTGCAGACACTTACCCATAA
TAATCAGGATTTCTCCCATATTGAGGAATAACAATAAGATCAAGATTGTC
ATTCCCAACATCATCATCAGCAATACTGGAAGGGGGGAGTAAGTAACCTT
CTGACGGATCGCTCATACCTGCGCCAGGAAGAGTTTTCATATTCTTCAAG
TCAGAAAAGATATTTGCTAGCTTCGAGTGCACTATATTAAAAAATCTGTC
ATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGC
CGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTG
TCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCA
GTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGT
GATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGGTTGG
TCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAAC
GAGCTGGCCGATGGGTACAGCACCGGC
back to top