CF835749

Overview
NameCF835749
Unique NameCF835749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.164e-34
Identity = 70/94 (74.47%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G
Sbjct:   82 CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKG 175          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 70/94 (74.47%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G
Sbjct:   83 CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKG 176          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.985e-34
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 2
Query:  431 KNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM  QCLGAI G G+VK FQ+  Y   GGGAN +  GY+ G
Sbjct:   79 KSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKG 177          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.985e-34
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:  428 AKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGA+ G G+VK FQ+  Y   GGGAN +A GY+ G
Sbjct:   79 SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKG 178          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34
Identity = 70/100 (70.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:  428 AKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQ+  Y   GGGAN +  GY+ G
Sbjct:   78 SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKG 177          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            C+ VGI G+AWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YMV QCLGAI G G+VK F    Y R GGGAN +  GY+ G
Sbjct:   83 CSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKG 176          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.743e-33
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:  428 AKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +K+   C  VGI GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGL LARK+SL RAV Y+V QCLGA+ G G+VKAF  + Y   GGGAN ++ GY+ G
Sbjct:   84 SKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKG 183          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.139e-32
Identity = 70/112 (62.50%), Postives = 83/112 (74.11%), Query Frame = 2
Query:  395 SVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ-KSYYTRYGGGANELADGYSTG 727
            +VIG K Q+       G  G G+LGIAWAFGG+IFVLVYCTAGISGGH+NPAVTF + LAR+VSL RA +Y +AQC+GA+ G GL +A      Y R+GGGANELA GYS G
Sbjct:   54 TVIGEKRQS-------GEGGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAG 158          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.019e-30
Identity = 67/95 (70.53%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  446 CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ-KSYYTRYGGGANELADGYSTG 727
            C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV Q LGAI G G+VK F+ K  +    GGAN +A GY+ G
Sbjct:   85 CKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKG 179          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  428 AKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            +K+   CA VGI GIAW+FGGMI  LVYCTAGISG HINPAVTFGLFLARK+SL RAV Y++ QCLGAI G G+VK FQ+  Y   GG  N +A GY+ G
Sbjct:   78 SKSTSKCATVGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKG 176          
The following BLAST results are available for this feature:
BLAST of CF835749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PIP11_ARATH1.164e-3474.47Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP15_ARATH1.520e-3474.47Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ORYSJ1.985e-3470.71Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP12_MAIZE1.985e-3468.00Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP15_MAIZE2.592e-3470.00Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP1_SOLLC4.422e-3473.40Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP16_MAIZE3.743e-3367.00Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ4.139e-3262.50Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP2_PEA1.019e-3070.53Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP11_MAIZE2.966e-3066.00Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835749 ID=CF835749; Name=CF835749; organism=Citrus sinensis; type=EST; length=727bp
TTTTGATACACAATAGTTTTTATTTATTAATTAAAGAAGACAAAGTACAT
GAACGCAAACAAAGATAATCTCTTGTATAAGAGATTTTTGTAAGTGAACT
GAACTAAATTGACACTCTTATAATTGATAGATAATAACTGTACCCATCTT
TTTATTTAATTATATATATCATCATCCAGATTGCAGACACTTACCCATAA
TAATCAGGATTTCTCCCATATTGAGGAATAACAATAAGATCAAGATTGTC
ATTCCCAACATCATCATCAGCAATACTGGAAGGGGGGAGTAAGTAACCTT
CTGACGGATCGCTCATACCTGCGCCAGGAAGAGTTTTCATATTCTTCAAG
TCAGAAAAGATATTTGCTAGCTTCGAGTGCACTATATTAAAAAATCTGTC
ATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGC
CGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTG
TCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCA
GTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGT
GATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGGTTGG
TCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAAC
GAGCTGGCCGATGGGTACAGCACCGGC
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