CF835749

Overview
NameCF835749
Unique NameCF835749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12881 contig Csv1_Contig12881:890..1616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  470 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI    ++     S  T    G N+LADG ++G
Sbjct:   52 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS-LTGNSLGRNDLADGVNSG 136          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  470 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAVMY++AQC+GAI    ++     S       G NELA G ++G
Sbjct:   54 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPGVNSG 138          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  470 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G
Sbjct:   52 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHGVNSG 136          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  470 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI    ++     S       G N+LADG ++G
Sbjct:   52 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS-LPGNSLGRNDLADGVNSG 136          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  455 VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 652
            V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y++AQCLGAI G G++
Sbjct:   68 VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL 133          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  470 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            IA+ FG ++  L      +SG HINPAVT GL +   VS+++   Y+V+QC+GAI+G  ++KA   S     G G   +A G STG
Sbjct:   57 IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEVVG-GLGVTGIAPGLSTG 141          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  470 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG 727
            ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G
Sbjct:   52 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARGVNSG 136          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  455 VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 652
            V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   68 VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 133          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  455 VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 652
            V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   71 VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 136          
BLAST of CF835749 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  455 VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 652
            V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   68 VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
The following BLAST results are available for this feature:
BLAST of CF835749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
AQP1_HUMAN6.213e-1243.02Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_CANFA1.808e-1143.02Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE2.361e-1141.86Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_PONAB3.084e-1141.86Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP4_MOUSE4.027e-1148.48Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP_ANOGA5.260e-1141.86Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP1_RAT5.260e-1141.86Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP4_RAT8.972e-1148.48Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL8.972e-1148.48Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN8.972e-1148.48Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835749 ID=CF835749; Name=CF835749; organism=Citrus sinensis; type=EST; length=727bp
TTTTGATACACAATAGTTTTTATTTATTAATTAAAGAAGACAAAGTACAT
GAACGCAAACAAAGATAATCTCTTGTATAAGAGATTTTTGTAAGTGAACT
GAACTAAATTGACACTCTTATAATTGATAGATAATAACTGTACCCATCTT
TTTATTTAATTATATATATCATCATCCAGATTGCAGACACTTACCCATAA
TAATCAGGATTTCTCCCATATTGAGGAATAACAATAAGATCAAGATTGTC
ATTCCCAACATCATCATCAGCAATACTGGAAGGGGGGAGTAAGTAACCTT
CTGACGGATCGCTCATACCTGCGCCAGGAAGAGTTTTCATATTCTTCAAG
TCAGAAAAGATATTTGCTAGCTTCGAGTGCACTATATTAAAAAATCTGTC
ATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGC
CGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTG
TCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCA
GTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGT
GATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGGTTGG
TCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAAC
GAGCTGGCCGATGGGTACAGCACCGGC
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