CF835753

Overview
NameCF835753
Unique NameCF835753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1127 contig Csv1_Contig1127:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835753 vs. ExPASy Swiss-Prot
Match: DI193_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  163 CPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHG 312
            CP+C ED D+  LC H++E+HP E  +  CP+C  ++T DM++HIT QHG
Sbjct:   64 CPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHG 113
The following BLAST results are available for this feature:
BLAST of CF835753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DI193_ORYSJ3.429e-1250.00Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835753 ID=CF835753; Name=CF835753; organism=Citrus sinensis; type=EST; length=699bp
GAAGATTCCCTGGATTACAGTAGATACTTTGGTCTTTCTACTTCATCATC
CACGAACTATCAGTCAACTCTCAAGTCTCAGTTTGCAGCGGATTTTTGCA
TTGATTTTGAGGATATAGAAGAAGATCATTATGAGGAAGTGAAAGGAGAG
TATGAGTATCCATGCCCATTTTGTTCGGAGGATTTTGATTTAGTTGGATT
ATGCTGTCATATTGATGAGGAACATCCTGTTGAAGCAAAGTCGGGGGTAT
GCCCTGTTTGCGTTACAAGGGTAACGATGGACATGGTTGATCACATAACA
ACACAACATGGAAACATTTCAAATATATCCTTCACGCGGTAGACTTGAAA
AGTGCCATTCTTTATTTCTGCTTTATTTCCTCCTTGGAATTTCTTGTCTT
TTCTTTTAACTCATTTTAGTTACTTTAGATTTCGCTTAAGTTCTTTACAT
GGCAATGATGATAAGTTGCTGCTATGCTTTACTTTCCTTAACAAGAGTTT
ACAGTTGGCACAAATTAAAACTTCATAAAGGCAACTCTAATTCAACTATA
TCATCTTTGAGGAAAGAGTTGCAAAATGCACATTTTCAATCTCTTCTTGC
AAGGTCATCCTCTTCTGTTTCTTCCTCCAAAAAGACATCTGATCCATGGC
TATCATTTATTTACAACATGCCTACTGCTGACGAGTCTGAAAGCATACA
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