CF835758

Overview
NameCF835758
Unique NameCF835758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7063 contig Csv1_Contig7063:157..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835758 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.107e-32
Identity = 71/180 (39.44%), Postives = 104/180 (57.78%), Query Frame = 3
Query:    6 EEHLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKL 545
            EE+L ++S LLL+ NP+HKKIPVLIHN KP+CES IIV+Y+DE W+   P ++PSDPY R+ ARFW  Y+D+K++   K +  + G E +E   ++LI     LE+        KPF+G    GF+D+    +  W    E     K+  E + P L  W +R      V + +P+  K+
Sbjct:   34 EENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSP-LMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGK-KELISIFKQLEETLT----DKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKM--EEECPKLMAWVKRCMERETVSNTLPDAKKV 205          
BLAST of CF835758 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.527e-30
Identity = 74/183 (40.44%), Postives = 102/183 (55.74%), Query Frame = 3
Query:    6 EEHLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEF 554
            EE+L  KS LLL+ NPVHKKIP+LIHN KP+CESL I+EY+DE W    P +LPSDPY R+ ARFWA Y+D K++   + + S  G E +E A ++ IE    LE         K +FGG  +GF+D+A   +  W    E      +  E +   L  W +    +  V   +P   K+ +F
Sbjct:   35 EENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCP-LLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKG-EDQEEAKKEFIEIFKTLEGEL----GNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSI--EAECRKLVVW-QNCMENERVSKSLPHPHKIYDF 208          
BLAST of CF835758 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 74/197 (37.56%), Postives = 109/197 (55.33%), Query Frame = 3
Query:    3 LEEHLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLF-PALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYL------GWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVLAK 572
            +EE L +KS LLL  NP+HKK+PVL+HN K + ES +I+EY+DE W  +   ILP DPY+R+ ARF+A  VDE++      S+  AD  + +E   EQ+ E ++ LE   V    GK +FGG  +GFLD   G  +      GW     + I ++++ E K P   +W         VKD +P  ++  E    +A+
Sbjct:   35 VEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN--PILPQDPYERSKARFFAKLVDEQIMNVGFISMARAD-EKGREVLAEQVRELIMYLEKELV----GKDYFGGKTVGFLDFVAGSLIPFCLERGW-----EGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEHMNYMAE 219          
BLAST of CF835758 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 76/199 (38.19%), Postives = 108/199 (54.27%), Query Frame = 3
Query:    6 EEHLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILP-------SDPYDRAVARFWAAYVDEKLFPALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFF---GGSQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVLAK 572
            EE LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+  + P +LP          Y RA ARFWA YVD KL+     +    G E + AA  ++ E L  LE         + FF   GG ++GF+D+A   +  W    E+     +  E   P L  WA R     +V   +P  +K+ +F  VL K
Sbjct:   36 EEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGT-PHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKG-EPQAAAGREMAEILRTLEAEL----GDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFVGVLKK 226          
BLAST of CF835758 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 74/198 (37.37%), Postives = 108/198 (54.55%), Query Frame = 3
Query:    6 EEHLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSD------PYDRAVARFWAAYVDEKLFPALKSIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFF---GGSQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVLAK 572
            EE LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+  +   + P++       Y RA ARFWA YVD KL+     +    G E + AA  ++ E L  LE         + FF   GG ++GF+D+A   +  W    E+     +  E   P L  WA R     +V   +P  +K+ +F  VL K
Sbjct:   36 EEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKG-EPQAAAGREMAEILRTLEAEL----GDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVAKHLPSPEKVYDFVGVLKK 226          
The following BLAST results are available for this feature:
BLAST of CF835758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTX3_SOYBN9.107e-3239.44Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTX1_NICPL6.527e-3040.44Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTXA_ARATH8.821e-2737.56Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTU1_ORYSJ2.402e-2438.19Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI2.402e-2437.37Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835758 ID=CF835758; Name=CF835758; organism=Citrus sinensis; type=EST; length=628bp
TTCTGGAGGAGCATTTGGGATCCAAAAGCGAGCTTCTGCTTAAATCAAAC
CCTGTTCACAAGAAAATCCCAGTTCTGATTCACAATGATAAGCCTGTTTG
CGAATCTCTCATCATTGTCGAGTACGTGGATGAGGCTTGGTCCTCTTCAG
GTCCCTCTATTCTTCCTTCTGATCCTTATGACCGTGCCGTTGCTCGTTTC
TGGGCCGCTTATGTTGATGAGAAGTTGTTCCCTGCCTTGAAAAGCATTGG
TAGTGCAGATGGAGCGGAAGCTAAGGAAGCTGCGATTGAGCAATTGATTG
AAGGCTTGGTTTTGCTGGAGGATGCTTTTGTTAAGTGTAGCAAAGGGAAG
CCTTTCTTTGGTGGAAGCCAAATTGGGTTTCTTGACATTGCATTTGGTTG
CTACTTGGGATGGGTGAGAGTGACAGAGAAAATGATTGAGGTGAAGCTCC
TTGATGAAGTCAAAACTCCTGGACTGTTCAAATGGGCTGAGAGATTCTGT
GCTGATGCCGCTGTCAAAGATGTTATGCCTGAGACTGATAAGCTTGCAGA
GTTTGCTAAGGTTCTTGCCAAACTCAGAGCTTCTGGCAAATGGAATTAAG
AAGCTTAATTCTGTGCTTGGAGGGGCAC
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