CF835762

Overview
NameCF835762
Unique NameCF835762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:69..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.467e-54
Identity = 116/246 (47.15%), Postives = 149/246 (60.57%), Query Frame = 1
Query:    4 MGPLIRAQRKGAG-SVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  I+ QR+G G S F + +H  K     +     E +  + G + +I HDP R AP+A V F    R      L +A EG+  G+ +  G  A +  GN LP+R IPEG  VCNVE  VGD G  ARASG  A +++H  D D   ++LPSG  K +   C+A IG VAGGGRTEKP +KAG  +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG IA++RTGR
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVGDIASKRTGR 236          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 210.305 bits (534), Expect = 9.373e-54
Identity = 116/246 (47.15%), Postives = 149/246 (60.57%), Query Frame = 1
Query:    4 MGPLIRAQRKGAG-SVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  I+ QR+G G S F + +H  K   + R ++ G+    + G V +I HDP R AP+A V F    R      L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   VKLPSG  K +   CRA IG VAGGGRT+KP +KAGN +HK + +   WP VRGVAMN V+HP GGG  QH G   ++ R+APPG+KVG IA++RTGR
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGD---VIAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGR 236          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.224e-53
Identity = 110/244 (45.08%), Postives = 146/244 (59.84%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTG 735
            MG  + +Q +G GS     T  R          FG+    ++G++ E++HDP R  P+ RV F +      ++ L +A EG+  G  + CG  A +  GN LP+  IPEG  +CN+E   GD G  AR+SG YA+I++H  +   T V++PSG  K +   CRA IG VAGGGRTEKP ++AGN ++K   K   WP VRGVAMN V+HP GGG  QH G   TV R+ PPG+KVG IAARRTG
Sbjct:    1 MGKRLMSQNRGKGSPTYRATSSRFKADLEHIKTFGDET--IEGIITEVVHDPARNCPIIRVKFGNG-----EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSIAARRTG 235          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.727e-53
Identity = 120/247 (48.58%), Postives = 152/247 (61.54%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  +  QR+G GS ++ S       PA++  L        L+G V E++HDPGR  PLA +   +        E +I AAEGMY GQ +  G  A  + GN+LPV  IPEG  V N+E   GD G L RA G YA+I+  +   + T ++LPSG  K +P+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+VRGVAMN V HPHGGG+HQ     +TV R+APPG+KVG IAAR TGR
Sbjct:    1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLT----PVTLRGRVVELVHDPGRWVPLAHIVLENG------DEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHIAARSTGR 235          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.727e-53
Identity = 116/246 (47.15%), Postives = 147/246 (59.76%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  I+ QR+G G   F + +H  K     + L+  +    + G +  I HDP R APLA + F    R      L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE + GD G  ARASG  A +++H  D D   V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN YHK + +   +P+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG IA++RTGR
Sbjct:    1 MGRRIQGQRRGRGGPTFRAPSHRYKAELSHKKLEDVDT---ITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTH--DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVGDIASKRTGR 236          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.076e-53
Identity = 116/246 (47.15%), Postives = 147/246 (59.76%), Query Frame = 1
Query:    4 MGPLIRAQRKGAG-SVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  I  QR+G G S F + +H  K     R++   E +  + G V +I HDP R APLA V F    R      L +A EG+  G  +  G  A +  GN +P+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   V+LPSG  + +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RD PPG+KVG IA++RTGR
Sbjct:    1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNV---EESDLVTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVGDIASKRTGR 236          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.938e-52
Identity = 116/246 (47.15%), Postives = 151/246 (61.38%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSV-FISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  +  QR+G G+  F + +H  +G  ++  L+  +    L G V EI+HDPGR AP+ARV F +       ++L IA EG+  G+ +  G  A + +GN LP+  IPEG+ V ++E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG IAARRTGR
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKT-LVGKVVEILHDPGRTAPVARVKFENGM-----EKLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHIAARRTGR 237          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.334e-51
Identity = 112/250 (44.80%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQ 750
            MG  +  QR G GS  F S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG IAARRTGR  G+
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEGK 238          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.334e-51
Identity = 112/250 (44.80%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQ 750
            MG  +  QR G GS  F S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG IAARRTGR  G+
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEGK 238          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.334e-51
Identity = 112/250 (44.80%), Postives = 153/250 (61.20%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQ 750
            MG  +  QR G GS  F S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG IAARRTGR  G+
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEGK 238          
The following BLAST results are available for this feature:
BLAST of CF835762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_HALWD2.467e-5447.1550S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_HALMA9.373e-5447.1550S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_UNCMA1.224e-5345.0850S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_HYPBU2.727e-5348.5850S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_HALLT2.727e-5347.1550S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_NATPD6.076e-5347.1550S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_THEON3.938e-5247.1550S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_SULIY3.334e-5144.8050S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM3.334e-5144.8050S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIL3.334e-5144.8050S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835762 ID=CF835762; Name=CF835762; organism=Citrus sinensis; type=EST; length=764bp
GAAATGGGTCCTTTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTT
CATTTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCA
CCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCC
AGAAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAA
GCTGCTGCCACTGC
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