CF835762

Overview
NameCF835762
Unique NameCF835762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:69..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.478e-38
Identity = 96/239 (40.17%), Postives = 131/239 (54.81%), Query Frame = 1
Query:   25 QRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            QR+G GS  F S TH   G  +  + D       +KG V  +I D    APL  V + +       + L  A  G+  G  VY GK+A   +G++ P+  IPEG  +  +E++ GD G L RASGD+A+++      D   V+LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG  H +     TV + APPG+KVG I AR+TGR
Sbjct:    9 QRRGRGSPTFRSPTHRAAGKVKIPTFD----GDLVKGKVVALIKDSIHYAPLMVVKWENG-----AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYIGARKTGR 236          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.606e-37
Identity = 96/243 (39.51%), Postives = 131/243 (53.91%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARR 729
            MG  I AQR+G GS V+ S +H   G  ++       R+G  K  + +II  PGR  P+  +          +K   IA  G Y  Q ++ G   +  +G+V  + +IP+G+ V N+E   GD G   RA+G  A++ISH        +KLPSG  K     CRA +G +AG G  + P+LKAG      + K      VRGVAMN V HPHGGGNHQH+G  STV R  PPG+KVG ++ +R
Sbjct:    1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVGRLSPKR 227          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.384e-27
Identity = 79/223 (35.43%), Postives = 119/223 (53.36%), Query Frame = 1
Query:    7 GPLIRAQRKGAGSVFISHT---HHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 663
            G + RA R  +G + +      H R+    +R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKRR----YREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.384e-27
Identity = 79/223 (35.43%), Postives = 119/223 (53.36%), Query Frame = 1
Query:    7 GPLIRAQRKGAGSVFISHT---HHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 663
            G + RA R  +G + +      H R+    +R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKRR----YREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.666e-26
Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 1
Query:   85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 663
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +AA+G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IP+ CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.331e-26
Identity = 79/236 (33.47%), Postives = 115/236 (48.73%), Query Frame = 1
Query:   28 RKGAGSVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQKVGLIAARRT 732
            R   G + + H   R     +R +DF      +   V  I +DP R A +  + +        +K   +A EG+  GQ V  G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I + CRA IG V  G  +   L KAG + H         P VRG  MNP++HPHGGG + Q IG  + +    P G+K   +  R+T
Sbjct:   44 RNNQGKITVRHQGGRV-KRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADG-----EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHPHGGGVSKQPIGRKAPL---TPWGKKALGVKTRKT 265          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.269e-26
Identity = 77/215 (35.81%), Postives = 109/215 (50.70%), Query Frame = 1
Query:   13 LIRAQRKGAGSVFISHT--HHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 645
            L+   RK AG  F       HR G  +  +R +DF      + G VA I +DP R A +A V +        +K   +A  G+  GQ +  G +A + VGN LP+R+IP G ++ N+E + G    + R++G  A +++   + D   V+LPSG  ++ P  CRA IGQV         + KAG A           P VRGV MNPV+HPHGGG
Sbjct:   33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYADG-----EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.410e-25
Identity = 69/193 (35.75%), Postives = 101/193 (52.33%), Query Frame = 1
Query:   85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 663
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.842e-25
Identity = 76/223 (34.08%), Postives = 120/223 (53.81%), Query Frame = 1
Query:    7 GPLIRAQRKGAGSVFISHT---HHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 663
            G  +++ R  +G + I      H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  + N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:   37 GKKLKSGRDSSGRISIRRRGGGHKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.406e-25
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 1
Query:   10 PLIRAQRKGAG---SVFISHTHHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 663
            PL+    K  G   +  I+  H   G  Q +R +DF      +   V  + +DP R A +A V +        ++   +A +G+  G  V  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IPS CRA IG+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:   32 PLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPATVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLKAGDKVQSGVDAAIKTGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
The following BLAST results are available for this feature:
BLAST of CF835762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NANEQ2.478e-3840.1750S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RL2_PICTO1.606e-3739.5150S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_BORRA4.384e-2735.4350S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL4.384e-2735.4350S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_EDWI91.666e-2636.7950S ribosomal protein L2 OS=Edwardsiella ictaluri ... [more]
RL2_MYCAP6.331e-2633.4750S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_DESAP8.269e-2635.8150S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RL2_PECCP1.410e-2535.7550S ribosomal protein L2 OS=Pectobacterium carotov... [more]
RL2_BORGA1.842e-2534.0850S ribosomal protein L2 OS=Borrelia garinii GN=rp... [more]
RL2_PROMH2.406e-2535.1450S ribosomal protein L2 OS=Proteus mirabilis (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835762 ID=CF835762; Name=CF835762; organism=Citrus sinensis; type=EST; length=764bp
GAAATGGGTCCTTTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTT
CATTTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCA
CCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCC
AGAAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAA
GCTGCTGCCACTGC
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