CF835767

Overview
NameCF835767
Unique NameCF835767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1129 contig Csv1_Contig1129:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835767 vs. ExPASy Swiss-Prot
Match: GDAP2_DROPS (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 37/142 (26.06%), Postives = 74/142 (52.11%), Query Frame = -2 
Query:  329 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFVGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 754
            G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+  +  LR +Y  +P   K+NL+A Y VHP    ++    F          +  K+  +  +++L+  + + ++EIP ++ ++D
Sbjct:  390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFM---APAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 526
[Close]
BLAST of CF835767 vs. ExPASy Swiss-Prot
Match: GDAP2_DROME (Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 37/142 (26.06%), Postives = 74/142 (52.11%), Query Frame = -2 
Query:  329 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFVGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 754
            G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+  +  LR +Y  +P   K+NL+A Y VHP    ++    F          +  K+  +  +++L+  + + ++EIP ++ ++D
Sbjct:  388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFM---APAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 524
The following BLAST results are available for this feature:
BLAST of CF835767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GDAP2_DROPS8.016e-1126.06Protein GDAP2 homolog OS=Drosophila pseudoobscura ... [more]
GDAP2_DROME8.016e-1126.06Protein GDAP2 homolog OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835767 ID=CF835767; Name=CF835767; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTGGTAAATCACATTGCATTTGGCATCTTCCTCTTCT
TAATTTACAATCAATATTCACAAACTTGGAACTCATGAGTAACCGAACAT
CTCCCTCTGAAAAAGTTATTCATAAGAAAAGAGTAAAAGAAAACACACGT
CACTAACACTAATGGAGGCCTCAGCAAGCAAGCGGGCCATAGGACGGGAT
CATCATCAGGAGATACACCTCATGGAGTAAATAGATAACGCTGGCGAGTC
CACTGCGGGCGCACCGTAGACTCTGCGGTGATCACTCTCCAAACCATAAT
CCATCATCGGACGGTACTCCAAATCCTCATCGTGATCCATCACAAATTCT
GGAATCTCGACCTCGTGCCTCCTCACGTGCTCCCACAAGTAATCAAGCCT
GTTCACATACCTCAGCTTCCCGTACAACCCTCCGACTCCGTTGAAGAAAA
GGCGGCCAAAGGTGGCAAGAAAGAGACGAGCCTGCAAGCCAGGATGAACA
AAATAAACGGCCTGGAGATTTTCCTTGACATTGGCGGGAATAGCATCATA
GATTGATCGAAGGGCCGAGATTCCAACAAAGTTCTCGCTTCTCTGCACTC
CTGTGTGAACGTACAACACCGTGAACGCCTTCTTCCCCAATCTTGGATAC
ACCCTCTCCGCCAAATACCTTTTCAGCACTTCAACGCTCAGAAGCCGCGC
GGGAAAGAATTTTCCTATGATACGAAGAATCTTGCGGCCTTGTTTGTCAC
GTCCATGAATCTTGAAAATTTCAAGCCTGTCGATGAGCTCTTCTTGT
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