CF835774

Overview
NameCF835774
Unique NameCF835774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835774_ssr487 microsatellite CF835774_ssr487:487..507. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12387 contig Csv1_Contig12387:261..1075. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLC4_ARATH (Xyloglucan glycosyltransferase 4 OS=Arabidopsis thaliana GN=CSLC4 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.313e-56
Identity = 114/199 (57.29%), Postives = 138/199 (69.35%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKESK---HNKGSSVPNLSEVK--------METKQEKM--VSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIGEQL 666
            YSFTLFCIILP+TMFIPEAELP W++CY+P  +S LNILP+PKSFPF+VPYLLFENTMS+TKFNAMISGLFQ GSAYEWVVTKK+GRSSE DL++  EKE K    N  S +  LS++K         ET ++ +  +         N ++ KE                   G+HFYFLLFQG+SFL+VGLDLIGEQ+
Sbjct:  474 YSFTLFCIILPLTMFIPEAELPLWIICYVPIFISLLNILPSPKSFPFLVPYLLFENTMSITKFNAMISGLFQFGSAYEWVVTKKTGRSSESDLLAFAEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNMVFKKELGLAFLLLTAAARSFLSAHGLHFYFLLFQGLSFLVVGLDLIGEQI 672          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLC3_ORYSJ (Probable xyloglucan glycosyltransferase 3 OS=Oryza sativa subsp. japonica GN=CSLC3 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.223e-55
Identity = 116/209 (55.50%), Postives = 138/209 (66.03%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGR-SSEGDLVSLVE--------KESKHNKGSSVPNLSE-VKMETKQEKM-------------VSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIGEQL 666
            YSFTLFC+ILP+TMF+PEAELP WV+CY+P  MS LNILPAPKSFPF++PYLLFENTMSVTKFNAM+SGLFQLGS+YEWVVTKK+GR SSE D+++L E          +K ++G S   L E  K+  +QE               V         NRI+ KE                  QG+HFYFLLFQGV+FL VGLDLIGEQ+
Sbjct:  536 YSFTLFCVILPLTMFVPEAELPIWVICYVPVIMSVLNILPAPKSFPFVIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRTSSESDILALAEAADADARPPPAKLHRGVSEGGLKEWAKLHKEQEDATAAAAAAAAPGTPVKKSKAAKAPNRIFKKELALAFLLLTAATRSLLSAQGLHFYFLLFQGVTFLAVGLDLIGEQV 744          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLC6_ARATH (Probable xyloglucan glycosyltransferase 6 OS=Arabidopsis thaliana GN=CSLC6 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.358e-53
Identity = 106/186 (56.99%), Postives = 126/186 (67.74%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIGEQL 666
            YSFTLFC+ILP+TMF PEA LP+WVVCYIP  MS LNI+PAP+SFPFIVPYLLFENTMSVTKF AMISGLF+  S+YEWVVTKK GRSSE DLV+  E  S     +   + S+  +    +   +        NR+Y  E                  QGIHFYFLLFQG++F++VGLDLIGEQ+
Sbjct:  496 YSFTLFCVILPLTMFFPEANLPSWVVCYIPGIMSILNIIPAPRSFPFIVPYLLFENTMSVTKFGAMISGLFKFDSSYEWVVTKKLGRSSEADLVAYAESGSLVESTTIQRSSSDSGLTELSKLGAAKKAGKTKRNRLYRTEIALAFILLAASVRSLLSAQGIHFYFLLFQGITFVIVGLDLIGEQV 681          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLAB_ORYSJ (Probable mannan synthase 11 OS=Oryza sativa subsp. japonica GN=CSLA11 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 48/182 (26.37%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIG 657
            +F  +C ++P+++++PE E+P W V Y+P  ++    +  P SF  ++ ++LFEN MS+ +  A ++G+ + G   EWVVT+K G ++         K      GS    + +V++ T     +            Y +                   +G ++ FL  QG++FL+VG D IG
Sbjct:  395 TFIYYCFVIPVSVWLPEIEIPLWGVVYVPTVITLCKAVGTPSSFHLVILWVLFENVMSLHRIKAAVTGILEAGRVNEWVVTEKLGDAN---------KTKPDTNGSDAVKVIDVELTTPLIPKLKKRRTRFWDKYHYSEIFVGICIILSGFYDVLYAKKG-YYIFLFIQGLAFLIVGFDYIG 566          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLAE_ARATH (Probable mannan synthase 14 OS=Arabidopsis thaliana GN=CSLA14 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSS 375
            ++F  +C+ILP T+  PE E+P W   YIPAT++ LN +  PKSF  I+ ++LFEN M++ +    + GL +     EW+VT+K G S+
Sbjct:  371 FTFVFYCVILPATVIFPEIEVPKWTTIYIPATITILNAIATPKSFYLILYWILFENVMAMHRSIGTLIGLLETSRVKEWIVTQKLGESN 459          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA1_ORYSJ (Glucomannan 4-beta-mannosyltransferase 1 OS=Oryza sativa subsp. japonica GN=CSLA1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIG 657
            +F  +C+I+P T+F+PE  +P W   YIP  ++ LN +  P+SF  +  ++LFEN MS+ +  A + GL + G A EWVVT+K G +          K    +K S+  +   V                   +R+ + E                  +   F +L FQG +F +VG+  +G
Sbjct:  361 TFAFYCLIIPATIFVPEVRIPKWGCVYIPTIITLLNSVGTPRSFHLLFFWILFENVMSLHRTKATLIGLLEAGRANEWVVTEKLGNAL---------KMKSSSKSSAKKSFMRV------------------WDRLNVTELGVAAFLFSCGWYDLAFGKDHFFIYLFFQGAAFFIVGIGYVG 515          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA2_ARATH (Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.958e-16
Identity = 38/93 (40.86%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKK--SGRSSEGD 384
            +F  +C++LP+T+ +PE ++P W   YIP+ ++ LN +  P+S   +  ++LFEN MS+ +  A + GLF+ G A EWVVT K  SG+S++G+
Sbjct:  374 TFCFYCVVLPLTILVPEVKVPIWGSVYIPSIITILNSVGTPRSIHLLFYWILFENVMSLHRTKATLIGLFEAGRANEWVVTAKLGSGQSAKGN 466          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA3_ARATH (Probable mannan synthase 3 OS=Arabidopsis thaliana GN=CSLA3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.046e-16
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLV 390
            ++F  +C+ILP T+  PE ++P W   Y P T++ LN +  P+S   +V ++LFEN MS+ +  A   GL + G   EWVVT+K G + +  L+
Sbjct:  396 FTFVFYCLILPTTVLFPELQVPKWATVYFPTTITILNAIATPRSLHLLVFWILFENVMSMHRTKATFIGLLEAGRVNEWVVTEKLGDTLKSKLI 489          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA3_ORYSJ (Probable mannan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLA3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  115 FTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSS 375
            F L+C+++P ++ IPE  +P W V Y+P T++ L+ +    S  FI  ++LFEN MS  +  AM  GL +LG   EWVVT+K G  S
Sbjct:  393 FMLYCVVIPFSVLIPEVTVPVWGVVYVPTTITLLHAIRNTSSIHFIPFWILFENVMSFHRTKAMFIGLLELGGVNEWVVTEKLGNGS 479          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA7_ARATH (Probable mannan synthase 7 OS=Arabidopsis thaliana GN=CSLA7 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.287e-15
Identity = 45/183 (24.59%), Postives = 79/183 (43.17%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIGE 660
            +F  +C+ILP T+  PE  +P W   Y+P+ ++ L  +   +S   +  ++LFEN MS+ +  A++ GLF+ G   EWVVT+K G                               +T + K++          R+++ E                  +   + +LLFQ V+F +VG   +G+
Sbjct:  396 TFCFYCVILPATVLFPEVTVPKWAAFYLPSLITLLIAIGRLRSIHLLAFWVLFENAMSLLRAKALVMGLFETGRVQEWVVTEKLG-------------------------------DTLKTKLIPQVPNVRFRERVHLLELLVGAYLLFCGIYDIVYGKNTLYVYLLFQSVAFFVVGFGFVGK 547          
The following BLAST results are available for this feature:
BLAST of CF835774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSLC4_ARATH1.313e-5657.29Xyloglucan glycosyltransferase 4 OS=Arabidopsis th... [more]
CSLC3_ORYSJ4.223e-5555.50Probable xyloglucan glycosyltransferase 3 OS=Oryza... [more]
CSLC6_ARATH1.358e-5356.99Probable xyloglucan glycosyltransferase 6 OS=Arabi... [more]
CSLAB_ORYSJ1.201e-1726.37Probable mannan synthase 11 OS=Oryza sativa subsp.... [more]
CSLAE_ARATH1.017e-1641.57Probable mannan synthase 14 OS=Arabidopsis thalian... [more]
CSLA1_ORYSJ1.017e-1628.02Glucomannan 4-beta-mannosyltransferase 1 OS=Oryza ... [more]
CSLA2_ARATH2.958e-1640.86Glucomannan 4-beta-mannosyltransferase 2 OS=Arabid... [more]
CSLA3_ARATH5.046e-1638.30Probable mannan synthase 3 OS=Arabidopsis thaliana... [more]
CSLA3_ORYSJ1.918e-1542.53Probable mannan synthase 3 OS=Oryza sativa subsp. ... [more]
CSLA7_ARATH7.287e-1524.59Probable mannan synthase 7 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835774 ID=CF835774; Name=CF835774; organism=Citrus sinensis; type=EST; length=814bp
CTGACTGGTACTATTCTGTTATTTAATTTGGTTTTGCAGATAAGCATGGG
GAAGAAATTTAATTTGATCTTTCTTTTCTTTCTGCTCAGAAAACTTATCC
TACCATTTTATTCTTTCACCCTCTTTTGTATAATTCTTCCCATGACAATG
TTTATCCCAGAGGCTGAGCTCCCTGCTTGGGTCGTCTGTTACATACCGGC
CACCATGTCATTTCTCAACATTCTCCCTGCTCCAAAATCCTTCCCATTTA
TTGTCCCTTACCTTCTTTTTGAAAACACAATGTCAGTGACCAAGTTCAAT
GCCATGATATCTGGCCTCTTCCAGCTCGGAAGTGCGTATGAGTGGGTCGT
TACCAAGAAATCCGGCCGCTCCTCTGAGGGTGATCTTGTTTCATTGGTTG
AGAAAGAGTCAAAACATAATAAGGGGTCCTCTGTACCCAACCTCAGTGAA
GTGAAGATGGAAACTAAACAAGAGAAAATGGTTTCCAAGAAGAAGAAGAA
GAAGAAGCATAATAGGATATACATGAAGGAATTGACACTGGCCTTCCTTC
TATTAACAGCTTCAGCTAGGAGCCTCCTGTCTGCTCAAGGGATCCATTTC
TACTTCTTACTCTTTCAGGGGGTATCATTCCTGCTCGTTGGTCTAGACTT
GATTGGTGAGCAGCTTGATTGAAGGCAAACAATAGGCATTGTAGGATAAG
ATATGGATAATTTCAGGCATACATGAAATGGGTGGACATCAGATAGTTAA
TTATCACTGAAACAAACCATCTGCGGGGGGGACTTTAGAGGGCCGTGACT
GCTCTGCTTGCTTG
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