CF835776

Overview
NameCF835776
Unique NameCF835776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 77/163 (47.24%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA    NVE  F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEI 172          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.346e-35
Identity = 76/182 (41.76%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 708
            L+K ++IG   VGKSCLL R                    R +++ GK +KLQIWDTAGQERFR++  +YYRG+ G+ LVYDVT+  S+N+I NW+ +++  AS +V  ILVGNKAD+ E +R V   +   +A E G+ F ETSA T   VEE+F    R I  ++   +   E   ++I+
Sbjct:    7 LVKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTE-QREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLKCTRTIMTKIDSGEVNLEHLGVQIS 187          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 77/163 (47.24%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F N+  W++ +  HA  N+  +LVGNK+D+ +  R V T   QA  +  G+ F ETSA  + NVE+ F  I  +I
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDL-KHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEI 173          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 74/165 (44.85%), Postives = 107/165 (64.85%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKI-RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 660
            K +L+GDSGVGK+  L++                     + + +DG R+KLQIWDTAGQERFR++T AYYR A  +LL+YDVT++++++NIR W+  I ++A ++V  +L+GNKAD   S+R V    G+ L  E+ + F ETSAKT LNVE  F ++AR +K R
Sbjct:  192 KTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVARQLKSR 356          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 77/183 (42.08%), Postives = 113/183 (61.75%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA----DTDSRAEPQTI 699
            L K+++IGDS VGKS LL R                  + +++ +DGK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T  S+F N+  W+  +  H+   V K+L+GNK D+ ES RAV   +G++LA+  G+ F ETSA  + NV+  F  + R+I   ++    ++DS  E  T+
Sbjct:   12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDL-ESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTV 193          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 75/163 (46.01%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LL YD+T   +F+N++ W+R +  H   N+  IL GNK+D+ +  RAV     QAL  + G+ F ETSA   LNV++ F +I  DI
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDL-KHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDI 173          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 77/164 (46.95%), Postives = 107/164 (65.24%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            + K+LLIGDS VGK+ LLLR                   K + I +DG+   LQIWDTAGQERFRTIT+++YRGA G+L+ YDVTD+ ++NN+  W++ I+++    V+++LVGNK D+ E ++ V  S  Q  AD  GI F ETSA T +NVEE F ++A +I
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDL-EDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEI 168          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 72/167 (43.11%), Postives = 110/167 (65.87%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIARDIKQR 660
            L KL+L+GD+ VGK+C++ R                   ++T+E+ GKR+KLQIWDTAGQERFRTIT +YYR A G +L YD++  S+F ++ +WI ++ ++A  N+ ++L+GNK+D+ +  R VP ++ Q+LA+ Y I    ETSAK + NVEE F  +A ++  R
Sbjct:   16 LFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLAD-LREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMR 181          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 72/167 (43.11%), Postives = 110/167 (65.87%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIARDIKQR 660
            L KL+L+GD+ VGK+C++ R                   ++T+E+ GKR+KLQIWDTAGQERFRTIT +YYR A G +L YD++  S+F ++ +WI ++ ++A  N+ ++L+GNK+D+ +  R VP ++ Q+LA+ Y I    ETSAK + NVEE F  +A ++  R
Sbjct:   16 LFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADF-REVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMR 181          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 74/169 (43.79%), Postives = 104/169 (61.54%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 669
            + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   IL+GNKAD+ E++R V   + +  A+E G+ F E SAKT  NVE+ F   A+ I Q + D
Sbjct:   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQD 178          
The following BLAST results are available for this feature:
BLAST of CF835776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_BOVIN1.837e-3547.24Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB4_DICDI5.346e-3541.76Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
YPTC6_CHLRE6.982e-3547.24Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAB26_DROME9.118e-3544.85Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
ARA4_ARATH9.118e-3542.08Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11A_TOBAC1.191e-3446.01Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RABG1_DICDI2.653e-3446.95Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB43_RAT2.653e-3443.11Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE2.653e-3443.11Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB14_RAT3.465e-3443.79Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01N24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835776 ID=CF835776; Name=CF835776; organism=Citrus sinensis; type=EST; length=736bp
TGCTGACGTATCAGAGACGCTTCGTTCACTCCCTCCTCATTTCTCTCATC
ATCTCCTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGAT
ATAAATTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCT
GATTACGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGG
TAAGAGTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTT
TTATTACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGAT
GGAAAACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTT
TCGAACAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCG
TATATGATGTCACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATC
CGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGG
TAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGG
GCCAAGCTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGCA
AAGACAAACCTAAATGTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACAT
CAAGCAAAGGCTTGCAGATACAGACTCTAGGGCTGAGCCTCAGACTATCA
AAATTAACCAACCTGACCAGGCAGGGGGGGCTGCTC
back to top