CF835776

Overview
NameCF835776
Unique NameCF835776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.076e-51
Identity = 98/163 (60.12%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 99/184 (53.80%), Postives = 129/184 (70.11%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQ 720
            K+LLIGDSGVGKSCLLLR                  KI+T+ LDGK IKLQIWDTAGQERFRTIT++YYRGA GI+LVYD TD+ SF N++ W+  I+++A +NVNK+LVGNK D+  +++ V +++ ++ A+ YGI F ETSAK   NVEE F S+ARDIK RLAD     +P  + I   ++
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDL-VNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDIKSKNK 194          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.022e-50
Identity = 102/185 (55.14%), Postives = 134/185 (72.43%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 717
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+ARDI   L  T  R    + K +  D
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI---LLKTGGRRSGNSSKPSSTD 188          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.022e-50
Identity = 96/163 (58.90%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            L KLLLIGDSGVGK+CL++R                  KIRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.449e-50
Identity = 101/176 (57.39%), Postives = 125/176 (71.02%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 690
            L KLLLIGDSGVGKSCLLLR                  KIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+   K+ V     +A ADE GI F ETSAK   NVE+ F ++A +IK R+A      +P
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKP 182          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.449e-50
Identity = 106/193 (54.92%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQP--DQAGG 729
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI      Q+GG
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.449e-50
Identity = 106/193 (54.92%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQP--DQAGG 729
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI      Q+GG
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.449e-50
Identity = 106/193 (54.92%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQP--DQAGG 729
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI      Q+GG
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.449e-50
Identity = 101/183 (55.19%), Postives = 133/183 (72.68%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ-TIKIN 708
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD+ GI F ETSAK   NVE+ F ++A +IK R+    + ++ + ++KIN
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKIN 192          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.449e-50
Identity = 106/193 (54.92%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQP--DQAGG 729
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI      Q+GG
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202          
The following BLAST results are available for this feature:
BLAST of CF835776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_MESAU9.076e-5160.12Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB1D_DICDI1.185e-5053.80Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB13_RAT2.022e-5055.14Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_HUMAN2.022e-5058.90Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
YPTV1_VOLCA3.449e-5057.39GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1A_RAT3.449e-5054.92Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG3.449e-5054.92Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE3.449e-5054.92Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST3.449e-5055.19Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1A_HUMAN3.449e-5054.92Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835776 ID=CF835776; Name=CF835776; organism=Citrus sinensis; type=EST; length=736bp
TGCTGACGTATCAGAGACGCTTCGTTCACTCCCTCCTCATTTCTCTCATC
ATCTCCTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGAT
ATAAATTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCT
GATTACGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGG
TAAGAGTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTT
TTATTACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGAT
GGAAAACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTT
TCGAACAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCG
TATATGATGTCACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATC
CGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGG
TAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGG
GCCAAGCTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGCA
AAGACAAACCTAAATGTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACAT
CAAGCAAAGGCTTGCAGATACAGACTCTAGGGCTGAGCCTCAGACTATCA
AAATTAACCAACCTGACCAGGCAGGGGGGGCTGCTC
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