CF835786

Overview
NameCF835786
Unique NameCF835786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_BRECH (Chaperone protein dnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  248 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPS----GSPFAVSGV 493
            YE+LG+  GA   EIK AYRKLAR  HPDV   +  E    KF ++ EAY+ LS+P+KRA YDR  F  + P+    G  F  SG+
Sbjct:    6 YEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEE---KFKEVKEAYDVLSEPQKRAQYDR--FGHQDPNQGFGGGGFDASGM 86          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  248 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 439
            YE+LG+   A+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGVSKSASKDEIKKAYRRLAKKYHPDV---SKEENAVEKFKEVQEAYEVLSDEQKRAQYDQ 67          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSS1 (Chaperone protein dnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  248 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSP 475
            YE+LG+Q  A+  EIK A+R+LAR  HPDV   ++  ++  KF +++EAYE LSDP+KR+ YDR  F    P+ +P
Sbjct:    8 YEVLGVQRNASQDEIKKAFRRLARQYHPDV---NKAPDAEAKFKEINEAYEVLSDPEKRSMYDR--FGHAGPTAAP 78          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  248 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSP 475
            YE+LG+Q  A+  EIK A+R+LAR  HPDV   ++  ++  KF +++EAYE LSDP+KR+ YDR  F    P+ +P
Sbjct:    8 YEVLGVQRNASQDEIKKAFRRLARQYHPDV---NKAPDAEAKFKEINEAYEVLSDPEKRSMYDR--FGHAGPTAAP 78          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_METTH (Chaperone protein dnaJ OS=Methanobacterium thermoautotrophicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  248 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 439
            YEILG+  GA  +EIK AYR+LAR  HPDV   S + ++A KF ++ EAY  LSD +KRA YDR
Sbjct:    7 YEILGVDRGADKKEIKKAYRRLARKYHPDV---SDDPDAAEKFKEISEAYAVLSDDEKRARYDR 67          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  248 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 439
            YEILG+   AT +EIK AYR+LA+  HPD  A   N+ +  KF +++EAYE LSDP+KR  YD+
Sbjct:    8 YEILGVPRNATQEEIKRAYRRLAKQYHPD--ANPGNKEAEEKFKEINEAYEVLSDPEKRRKYDQ 69          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_THETN (Chaperone protein dnaJ OS=Thermoanaerobacter tengcongensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  245 LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 439
            LYEILG+   A+ +EIK AYR+LA+  HPD+     ++ +  KF +++EAYE LSDP+KRA YD+
Sbjct:    6 LYEILGVDRNASQEEIKKAYRRLAKKYHPDL--NPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ 68          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTH (Chaperone protein dnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  233 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 439
            G    YEILG+  GA+  EIK AYRKLA+  HPD+     ++ +  KF +++EAYE LSDP+KRA YD+
Sbjct:    3 GKRDYYEILGVDRGASDAEIKKAYRKLAKQYHPDM--NPGDKAAEAKFKEINEAYEVLSDPQKRARYDQ 69          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ2_SYNY3 (Chaperone protein dnaJ 2 OS=Synechocystis sp. (strain PCC 6803) GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  248 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR-RRPSGSPFA--VSGVANTMATSSNSRFCAYSRRT 550
            Y+ILG+   AT +EIK ++RKLAR  HPDV     ++ +  KF  ++EAY+ LSD  KR + D  LF R RRP  S F+   +G  +   TS N +    + RT
Sbjct:    8 YQILGVPRNATAEEIKKSFRKLARQYHPDV--NPNDKTAEEKFKDINEAYDVLSDETKRRELDSRLFGRFRRPPTSRFSPNSNGGRSPNGTSVNGQVRTPTGRT 109          
BLAST of CF835786 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  230 PGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 439
            P     YEILG+   AT  EIK AYR+L R  HPD+   +++ ++  KF +++EAYE LSDP+KRA YD+
Sbjct:    2 PTKKDYYEILGVPRNATQDEIKQAYRRLVRQYHPDL---NKDPSAHEKFKEINEAYEVLSDPQKRAQYDQ 68          
The following BLAST results are available for this feature:
BLAST of CF835786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DNAJ_BRECH1.249e-1147.67Chaperone protein dnaJ OS=Brevibacillus choshinens... [more]
DNAJ_BACCN2.130e-1153.13Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNAJ_ROSS12.782e-1147.37Chaperone protein dnaJ OS=Roseiflexus sp. (strain ... [more]
DNAJ_ROSCS2.782e-1147.37Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_METTH3.633e-1156.25Chaperone protein dnaJ OS=Methanobacterium thermoa... [more]
DNAJ_CALS83.633e-1153.13Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]
DNAJ_THETN4.745e-1150.77Chaperone protein dnaJ OS=Thermoanaerobacter tengc... [more]
DNAJ_CLOTH4.745e-1150.72Chaperone protein dnaJ OS=Clostridium thermocellum... [more]
DNAJ2_SYNY34.745e-1141.35Chaperone protein dnaJ 2 OS=Synechocystis sp. (str... [more]
DNAJ_DICT66.198e-1148.57Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835786 ID=CF835786; Name=CF835786; organism=Citrus sinensis; type=EST; length=685bp
CTCTCATCTTCAAAACAAAACACAAGAAGTAATCTAATCATCGATTCAAT
CCATCATGTCTACTCTTGCATCTTCAGCCCATCTGATTGGCCCGGGATTT
ATCACCAACGAGACTCATTCACAATCACAGCCCACGTCTGTCAAATTCCG
CCCCCGCCCACTTCGCGTATCGGCATCGGCTTGCGCCTCAACGGCGGAGA
GAACAAGAACCCATCATCACATTACTTCTCCTGGACCCGGCTCACTCTAC
GAAATCCTGGGGATTCAGACGGGTGCCACGTGTCAGGAAATCAAGACTGC
TTATCGGAAATTAGCAAGAGTTTTGCACCCGGATGTTGCCGCTAAGAGTC
AAAATGAGAATTCAGCATATAAGTTCATGAAATTACACGAAGCTTACGAA
ACTCTATCTGATCCCAAGAAGCGTGCGGACTACGATCGTACCCTTTTCAG
GCGAAGAAGGCCATCGGGTTCCCCATTTGCGGTCTCGGGAGTGGCAAATA
CGATGGCCACTTCGTCGAATTCAAGATTTTGTGCCTACTCAAGGCGGACA
TGGGAGACTGATCAGTGCTGGTAGAAAATAAAATACATAGCTGCAACTGC
AAGATTATGTTATATGATCTTAGCTGTTCAGGAATTAGGATTAGAGATGC
TGCCCTTTAACGTCTGGGGATTAATGCTAACGCGT
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