CF835787

Overview
NameCF835787
Unique NameCF835787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_ECOL6 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Escherichia coli O6 GN=argC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = -3
Query:  517 VSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPG-RAIIISVIDNLVKGASGQALQNLNIMMGFPENTGLL 852
            V FTPH     RG+  TI   + PGV+   + Q L+ +Y H+  V+L +KG VP   NV G  +C +      + G   II++  DNL+KGA+ QA+Q  NI  G+ E   L+
Sbjct:  226 VIFTPHLGNFPRGILETITCRLKPGVSQVQVAQALQQAYAHKPLVRLYDKG-VPALKNVVGLPFCDIGF---AVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI 334          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_VIBVY (N-acetyl-gamma-glutamyl-phosphate reductase OS=Vibrio vulnificus (strain YJ016) GN=argC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  517 VSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKG-VVPRTHNVRGSNYCLMNVFPDRIPGRAII-ISVIDNLVKGASGQALQNLNIMMGFPENTGLL 852
            V FTPH     RG+ +TI +++  GVT E +      +Y+ +  V+L  KG V+PR  +V  + +C +     ++ G+ II IS IDNL+KGAS QA+Q LNI  GF   T LL
Sbjct:  226 VIFTPHLGNFKRGILATITMKLQDGVTKEQVAHAFAQAYDRKPAVRL--KGDVIPRIQDVEFTPFCDLGW---KVQGQHIIVISAIDNLLKGASSQAMQCLNIHYGFSPLTALL 334          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_VIBCH (N-acetyl-gamma-glutamyl-phosphate reductase OS=Vibrio cholerae GN=argC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = -3
Query:  517 VSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIII-SVIDNLVKGASGQALQNLNIMMGFPENTGLL 852
            V FTPH     RG+ +TI +++A GVT + + +    +Y+ +  V+      +PR  +V  + +C +     ++ GR II+ S IDNL+KGAS QA+Q LNI  GF E T L+
Sbjct:  226 VIFTPHLGNFKRGILATITMKLADGVTEQQVAEAFSKAYQDKPLVRF--SNGLPRIQDVEFTPFCDLGW---KVQGRHIIVVSAIDNLLKGASSQAMQCLNIHYGFDELTALV 333          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_SULMW (N-acetyl-gamma-glutamyl-phosphate reductase OS=Sulcia muelleri (strain GWSS) GN=argC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  520 VSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 852
            + F P+     RG+ ST+Y  +   ++ E++       Y+++ F+ L EK +      V  +N C++N+    I  + II S+IDNL+KGASGQA+QN+NIM  F E  GL
Sbjct:  214 IYFIPYRGGFSRGIISTLYTRI--DLSFEEIKNIYDKFYKNDPFIFLSEKEI--HLKQVINTNKCILNL--KYIKNKLIITSIIDNLIKGASGQAVQNMNIMYNFEETCGL 318          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_PHOLL (N-acetyl-gamma-glutamyl-phosphate reductase OS=Photorhabdus luminescens subsp. laumondii GN=argC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = -3
Query:  517 VSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGLL 852
            V FTPH     RG+ +TI  ++ PGVT E + +  + +Y+ +  V+L  KG VP   +V G  +C +           I++   DNL+KGA+ QA+Q +NI  GF E   LL
Sbjct:  226 VVFTPHLGNFARGILATITCKLKPGVTAEQIDEVYRQAYKDKPLVRLYSKG-VPALKSVVGLPFCDIGFVVQ--GDHLIVVGTEDNLLKGAAAQAVQCMNIRFGFEETQALL 334          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_HALWD (N-acetyl-gamma-glutamyl-phosphate reductase OS=Haloquadratum walsbyi (strain DSM 16790) GN=argC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = -3
Query:  520 VTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGV----VPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 858
            ++VSFT H + M RG  +T +V  +  V+  DL       Y  E F++ +  G      P   +V GSNY  +    D    R +I S IDN++KG++GQA+   NI +G  E TGL
Sbjct:  219 LSVSFTAHAVEMTRGASATCHVFPSEPVSNSDLWGAYHDVYAEEPFMRTVAGGGGVYRYPEPKSVAGSNYAEVGFERDPENHRLVIFSAIDNMMKGSAGQAVHAANIALGIDETTGL 335          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_HALMA (N-acetyl-gamma-glutamyl-phosphate reductase OS=Haloarcula marismortui GN=argC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = -3
Query:  511 VTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGV----VPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGLLYQ 858
            + VSFT H + MIRG  +T +V     V+  DL    +  YE E FV+L+  G      P   +V G+N   +    D    R ++ S IDN++KG++GQA+   N+ +G  E  GL +Q
Sbjct:  218 IDVSFTVHAVDMIRGASATCHVFPEQRVSKGDLWGAYRGEYEDEPFVELVAGGGGVYRYPEPKSVAGTNRAEVGFELDPGNKRLVVFSAIDNMMKGSAGQAVHAANVALGIEETAGLEFQ 337          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_CORK4 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=argC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = -3
Query:  520 VTVSFTPHXMPMIRGMQSTI----------YVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 858
            V VSFTP   PM RG+ +T             E  P    + +    +  Y  E+FV +L     P T +V GSN   +    D    R ++ S IDNLVKG +G A+Q +N+  G+PE++GL
Sbjct:  228 VQVSFTPVLAPMQRGILTTASAPASDELVALTEKDPSAAQDAVKAAYRSFYSDEKFVVVLNGDQQPATQSVLGSNAVHIQAEYDVAARRVVVTSAIDNLVKGTAGAAIQCMNLAQGWPEDSGL 350          
The following BLAST results are available for this feature:
BLAST of CF835787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
ARGC_ECOL65.335e-1138.05N-acetyl-gamma-glutamyl-phosphate reductase OS=Esc... [more]
ARGC_VIBVY6.968e-1141.23N-acetyl-gamma-glutamyl-phosphate reductase OS=Vib... [more]
ARGC_VIBCH6.968e-1138.05N-acetyl-gamma-glutamyl-phosphate reductase OS=Vib... [more]
ARGC_SULMW6.968e-1136.94N-acetyl-gamma-glutamyl-phosphate reductase OS=Sul... [more]
ARGC_PHOLL6.968e-1136.61N-acetyl-gamma-glutamyl-phosphate reductase OS=Pho... [more]
ARGC_HALWD6.968e-1135.90N-acetyl-gamma-glutamyl-phosphate reductase OS=Hal... [more]
ARGC_HALMA6.968e-1135.00N-acetyl-gamma-glutamyl-phosphate reductase OS=Hal... [more]
ARGC_CORK49.100e-1134.96N-acetyl-gamma-glutamyl-phosphate reductase OS=Cor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835787 ID=CF835787; Name=CF835787; organism=Citrus sinensis; type=EST; length=863bp
CCCTTTGAGAAGTAATATATCGAATTTTACATAATTAAATGTCTGGTAAT
ACAATAAAATCATGCCAATCATCAAGAGGCAGCCATGTAATCCTAACAAT
TGGAAGACTAACTTGAATAAAAAGCACTTCTAATTGGTGTATTGAGGTGT
TACCACCACTTGCAAGCACAAAATGTTAAACCAATTTCTCAAAATTCCCT
CAACACTGATAAGTGAATATTCATTATTACACAAATGGACTCCTGTTATA
CTATTCTACATGCTTCTAGCACCACTCTTCTCTGACAATTCGACGAAATG
GAGGAACTCTTCAAAAGGGTGTCGGAGCTTTGAAAACAAAATTCCCCCAA
AGTAACCTGAACTGTTCCTGAACAGCCTCCATAGTCGATAGACGAAATAT
ACTAATTTTCAAGAGAGTTTTGGGTAGGCTAAGAGAGATTTGTTAATTAG
TGTTGAAAATGCCTGCTTACTCTTTAAACATATTAAGAAAAGAAACTAAG
GAAACAAGGGCTGATATAGAAGCCCAGTATTTTCCGGAAATCCCATCATT
ATGTTAAGATTTTGAAGAGCTTGACCTGATGCTCCCTTCACAAGATTATC
AATAACTGATATAATTATTGCTCTTCCAGGAATTCGATCAGGAAAGACAT
TCATCAAACAGTAATTAGAACCTCGAACATTGTGAGTCCGAGGGACAACT
CCCTTTTCCAACAACTTCACAAATTCCTCATGCTCATAGGAGATTTTTAA
TTGCTGGCATAAATCCTCGATTGTCACTCCTGGAGCCATTTCAACGTATA
TAGTTGATTGCATGCCTCGGATCATTGGCATTANGTGTGGAGTGAAACTG
ACTGTTACTTTTG
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