CF835788

Overview
NameCF835788
Unique NameCF835788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_PARDP (N-acetyl-gamma-glutamyl-phosphate reductase OS=Paracoccus denitrificans (strain Pd 1222) GN=argC PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.056e-57
Identity = 107/201 (53.23%), Postives = 142/201 (70.65%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            ++  +LGASGYTGAE+VR+LA HP   I  ++ADRKAGQ    VFPHL    LP +V +++ DFS +D VFC LPHG +Q ++  LP+++KIVDL ADFRLRD ++Y++WYG  H AP++Q EAVYGLTE  R+ I+ ARLVA  GC   ++Q  L PLI + LI   +II D K+GVSGAGR  KE  L++E +E +  Y
Sbjct:    3 LKAAILGASGYTGAELVRILATHPRIEIAALSADRKAGQGYDEVFPHLRHLKLPALVRMEEIDFSAIDLVFCALPHGLSQPLVGQLPRNVKIVDLGADFRLRDPADYKKWYGLDHAAPEVQPEAVYGLTEFYRDQIRGARLVAGTGCNAATVQFALRPLIGSGLIDLDDIICDLKNGVSGAGRSLKENMLFAERSEDVAGY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_ROSDO (N-acetyl-gamma-glutamyl-phosphate reductase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=argC PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.344e-56
Identity = 110/199 (55.28%), Postives = 136/199 (68.34%), Query Frame = 2
Query:  245 IGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            I +LGASGYTGAE++RL+A H    IT + A  KAGQS+  VFPHL   DLP ++ +   DF+N+D  FC LPH T+QE+I  LP  LK+VDLSADFRLRD   YE+WYG  H A   Q EAVYGLTE  R+DIK ARLVA  GC   + Q  L PLI A +I   +II+D K  VSGAGR  KE  L++E++EG ++Y
Sbjct:    5 IAILGASGYTGAELIRLIAGHSALKITALGAFSKAGQSVAQVFPHLRHLDLPALLQIDQIDFANIDLCFCALPHKTSQEVIAALPSDLKVVDLSADFRLRDPDAYEKWYGNKHAALKQQAEAVYGLTEFYRDDIKTARLVAGTGCNAATGQYMLRPLITAGVIDLDDIILDLKCAVSGAGRSLKENLLHAELSEGYHAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_SILPO (N-acetyl-gamma-glutamyl-phosphate reductase OS=Silicibacter pomeroyi GN=argC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.061e-56
Identity = 109/200 (54.50%), Postives = 137/200 (68.50%), Query Frame = 2
Query:  242 RIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +I +LGASGYTGAE+VRL+A HP   I  ++ +RKAGQS+  VFPHL   DLP +  + + DF+ VD  FC LPH T+QE+I+ LP +LKIVDLSADFRLRD   Y  WYG  H+A + Q EAVYGLTE  R+ I+ ARLVA  GC   + Q  L PLI A +I    II+D K  VSGAGR  KE  L++E++EG  +Y
Sbjct:    4 KIAILGASGYTGAELVRLIAEHPNMEIVALSGERKAGQSMAEVFPHLRHLDLPVLCKIDEIDFAGVDLCFCALPHKTSQEVIRALPATLKIVDLSADFRLRDPEAYRTWYGNEHVALEQQAEAVYGLTEFYRDQIRTARLVAGTGCNAATGQYVLRPLIAAGVIDLDEIILDLKCAVSGAGRSLKENLLHAELSEGANAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_SILST (N-acetyl-gamma-glutamyl-phosphate reductase OS=Silicibacter sp. (strain TM1040) GN=argC PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.820e-56
Identity = 107/199 (53.77%), Postives = 136/199 (68.34%), Query Frame = 2
Query:  245 IGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            + +LGASGYTGAE++RL++ HP   I  + A+RKAG  +  VFPHL    LPT+  + + DF+ +D  FC LPH T+QE+I  LP  LKIVDLSADFRLRD   YE+WYG PH A + Q+EAVYGLTE  R++IK ARLVA  GC   + Q  L PLI A +I    II+D K  VSGAGR  KE  L++E++EG  +Y
Sbjct:    5 VAILGASGYTGAELIRLISQHPSITIKALAAERKAGMEMADVFPHLRHLSLPTLCKIDEIDFAQIDLCFCALPHKTSQEVIAKLPGDLKIVDLSADFRLRDPEAYEKWYGNPHAALEQQQEAVYGLTEFYRDEIKGARLVAGTGCNAATGQFALRPLIAAGVIDLDEIILDMKCAVSGAGRALKENLLHAELSEGYNAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_MAGSM (N-acetyl-gamma-glutamyl-phosphate reductase OS=Magnetococcus sp. (strain MC-1) GN=argC PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.278e-50
Identity = 100/210 (47.62%), Postives = 137/210 (65.24%), Query Frame = 2
Query:  233 KQVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHL------ISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            + +R+ +LGA+GYTG E++RLL  HP   ++ ++++R AGQSI  V+ HL      I Q +    A + ADF     +FC LPH T+ E++  L  +  K+VDLSADFRL+    Y  WYG  H+AP+L  +A YGL E+ RE IK A LVANPGCYPTS+QLPL PL+Q  +I    +I D KSGVSGAGR   +  L++E++EG  +Y
Sbjct:    3 RTLRVAILGATGYTGGELIRLLHRHPGAELSFVSSERFAGQSIAKVYTHLQAVGHLICQPMDAKKACEAADF-----IFCALPHVTSMEVVPELLQRGAKVVDLSADFRLKSAETYAHWYGTQHLAPELLPQAAYGLPELFRESIKGANLVANPGCYPTSVQLPLFPLLQEGMIDPALVIADSKSGVSGAGRSPAQGTLFAELSEGFKAY 207          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_EHRCR (N-acetyl-gamma-glutamyl-phosphate reductase OS=Ehrlichia chaffeensis (strain Arkansas) GN=argC PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.627e-49
Identity = 94/203 (46.31%), Postives = 138/203 (67.98%), Query Frame = 2
Query:  236 QVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            QV + ++GA+GY G E+VRLL +HP   I  + A + +G+ + S + H+   D+   ++   D D S VD VF CLPHGT+ E+++ +   ++I+DLSADFR++D   Y++WYG  H  PDL ++ VYGLTEI  EDI+ +R +A PGCYPTS+ +PL PL++  LI+ + II+D KSGVSGAGR  K+  L+ E+ + I SY
Sbjct:    4 QVSVAVVGATGYVGVELVRLLLSHPMVKIKYLCATQSSGKLLSSNYFHISQDDISVNISSFDDIDLSKVDVVFLCLPHGTSSEVVRKIHDVVRIIDLSADFRIKDAEVYKQWYGS-HCCPDLVRDFVYGLTEIYWEDIQRSRFIACPGCYPTSVLIPLFPLLRLCLIKSQGIIVDAKSGVSGAGRSVKQDKLFCEVYDVIKSY 205          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_EHRCJ (N-acetyl-gamma-glutamyl-phosphate reductase OS=Ehrlichia canis (strain Jake) GN=argC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 94/203 (46.31%), Postives = 133/203 (65.52%), Query Frame = 2
Query:  236 QVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            QV + ++GA+GY G E+VRLL  HP   I  + A +  G+ + S + H+    +   V+   D D   +D VF CLPHG + EI+K +   +K++DLSADFR++D   Y++WYG  H  PDL K+ VYGLTEI  EDI+ +  +A PGCYPTS+ +PL PL++  L++  NII+D KSGVSGAGR  K+ NL+ E+ + I SY
Sbjct:    4 QVSVAVVGATGYVGVELVRLLLAHPMVKIRYLCATQSTGKLLSSSYFHISQNYISISVSSFDDIDLDKLDVVFLCLPHGASSEIVKKIHNVVKVIDLSADFRIKDPDIYKQWYGV-HYCPDLIKDFVYGLTEIYYEDIQKSSFIACPGCYPTSVLIPLFPLLRLRLVKSNNIIVDAKSGVSGAGRSVKQDNLFCEVYDAIKSY 205          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_NITEC (N-acetyl-gamma-glutamyl-phosphate reductase OS=Nitrosomonas eutropha (strain C91) GN=argC PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 92/202 (45.54%), Postives = 134/202 (66.34%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            + +G++G +GYTG E++R+LA HP   + ++T+ ++AG  +  +F  L  Q           DF   D VF   P+G   + +  L  S +K++DLSADFR++DV+E+EEWYG  H AP+L  EAVYGL E++RE I+NARL+ANPGCYPT++QL  +PLI+A  +   ++I D KSGVSGAGR A+   LY+E ++   SY
Sbjct:    2 INVGIVGGTGYTGVELLRILAQHPKAKLKVITSRQEAGTGVDDLFSSLRGQITLKFSDPLKVDFGKCDVVFFATPNGIAMQQVSALLGSGIKVIDLSADFRIKDVAEWEEWYGMSHTAPELVAEAVYGLPEVNREKIRNARLIANPGCYPTAVQLGFIPLIEAGAVDENHLIADTKSGVSGAGRKAEIHTLYAEASDNFKSY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_PELCD (N-acetyl-gamma-glutamyl-phosphate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=argC PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 102/203 (50.25%), Postives = 131/203 (64.53%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQ-DLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GASGYTG E++RLL NHP   IT +T+ + AG SI SVFP L  + DL       D      D VF  LPH     ++   L    K+VDLSAD+RL DV  YE WY + H +P+L  EAVYGL E+ R+ + +ARLVANPGCYPTSI L L PL++ NLI   ++IID KSG SGAGR AK  +LY E+ EG  +Y
Sbjct:    2 LKVAIVGASGYTGVELIRLLLNHPQVEITCVTSRQNAGASIDSVFPSLAGRIDLTFDPVDVDTIIRKSDFVFTALPHKAAMAVVPAFLHAGKKVVDLSADYRLHDVDVYEAWYDK-HTSPELLDEAVYGLPELYRQQVVDARLVANPGCYPTSIALGLAPLLENNLIDAASLIIDSKSGTSGAGRSAKVGSLYCEVNEGFKAY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_EHRRW (N-acetyl-gamma-glutamyl-phosphate reductase OS=Ehrlichia ruminantium (strain Welgevonden) GN=argC PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 95/204 (46.57%), Postives = 133/204 (65.20%), Query Frame = 2
Query:  236 QVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAV-KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            QV + ++GA+GY G E+VRLL  HP   I  + A +  G  + S + H++   +P  ++     D S VD +F CLPHG + EI+K +   +KI+ DLSADFR++D+  Y+EWYG  H  PDL ++ VYGLTEI  E+IK +R VA PGCY TS  +PL PL++  L++ +NII+D KSGVSGAGR   +  L+ EI + I SY
Sbjct:    4 QVSVAVVGATGYVGVELVRLLLFHPMVKIKYLCATQSIGSLLSSHYDHVLKDSIPVSISCFSSIDLSKVDVIFLCLPHGQSNEIVKKIHNEVKIIIDLSADFRIKDIDTYKEWYGA-HCCPDLIQDFVYGLTEIYWEEIKKSRFVACPGCYATSALVPLFPLLRLRLVKSQNIIVDAKSGVSGAGRSVDQKKLFCEIHDVIKSY 206          
The following BLAST results are available for this feature:
BLAST of CF835788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
ARGC_PARDP8.056e-5753.23N-acetyl-gamma-glutamyl-phosphate reductase OS=Par... [more]
ARGC_ROSDO2.344e-5655.28N-acetyl-gamma-glutamyl-phosphate reductase OS=Ros... [more]
ARGC_SILPO3.061e-5654.50N-acetyl-gamma-glutamyl-phosphate reductase OS=Sil... [more]
ARGC_SILST6.820e-5653.77N-acetyl-gamma-glutamyl-phosphate reductase OS=Sil... [more]
ARGC_MAGSM3.278e-5047.62N-acetyl-gamma-glutamyl-phosphate reductase OS=Mag... [more]
ARGC_EHRCR1.627e-4946.31N-acetyl-gamma-glutamyl-phosphate reductase OS=Ehr... [more]
ARGC_EHRCJ1.377e-4846.31N-acetyl-gamma-glutamyl-phosphate reductase OS=Ehr... [more]
ARGC_NITEC2.349e-4845.54N-acetyl-gamma-glutamyl-phosphate reductase OS=Nit... [more]
ARGC_PELCD1.166e-4750.25N-acetyl-gamma-glutamyl-phosphate reductase OS=Pel... [more]
ARGC_EHRRW1.166e-4746.57N-acetyl-gamma-glutamyl-phosphate reductase OS=Ehr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835788 ID=CF835788; Name=CF835788; organism=Citrus sinensis; type=EST; length=841bp
TTTCAATTTAACCATCCAATCGGACCAATATAAAATAGTTTGATACAAAA
TGAGTGCAGCAACTTTCAGTTCACTTTGTTTCTCTCGAGGGTGTTTCTGG
AAGGATGAGGCTAAGAATTCTCCAAGGGTGATGAAGGGAAGTGGGAAAGT
AAAGATCAGTAGCATAAGAGGTTCTGCGACTTTGCCAACGAAAAGCTTGC
AGGTAGAAGATGGGAAGACTCAAAAGTCTGAAAAGCAAGTCCGCATTGGT
CTTCTTGGCGCAAGTGGTTACACTGGTGCAGAGATTGTACGACTCCTTGC
AAACCATCCATACTTTGGCATTACACTGATGACTGCTGATAGAAAAGCTG
GCCAATCAATTGGATCAGTGTTTCCTCATTTGATATCACAGGATTTGCCA
ACAATGGTTGCTGTCAAGGATGCAGATTTTTCAAATGTCGATGCAGTATT
TTGTTGTTTGCCTCATGGAACCACTCAGGAAATCATCAAAGGACTTCCGA
AGAGTTTAAAGATTGTTGATCTTTCTGCAGACTTTCGATTGCGTGATGTT
TCTGAGTACGAAGAGTGGTATGGACAACCACATATTGCACCTGATTTGCA
GAAAGAAGCTGTGTATGGTTTGACAGAAATTTCGAGGGAAGATATTAAAA
ATGCACGCCTTGTAGCTAATCCTGGTTGTTACCCAACATCCATTCAACTT
CCTCTTGTTCCCTTGATACAGGCTAATTTGATTCAATATAGAAATATCAT
TATTGACGNCAAATCTGGCGTGAGTGGAGCAGGACGTGGCGCTAAGGAGG
CTAATTTATACTCAGAAATAGCTGAAGGCATTTATTCTTAT
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