CF835788

Overview
NameCF835788
Unique NameCF835788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACCQ (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus cereus (strain Q1) GN=argC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.281e-35
Identity = 74/203 (36.45%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GA+GY G E++RLL  HPYF I  + +  + G+ I +V+PH  +  + T+  +   +     + VF   P G + E+  K L   LK++DLS DFR++D   YE+WY +     ++  +AVYGL+E  R +++NA L+ANPGC+ T+  L  +PL+++ +I+  +IIID KSGVSGAG+       + E+ + +  Y
Sbjct:    1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDAEEIVKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEEILSKAVYGLSEWKRSEVQNANLIANPGCFATAALLATLPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACC7 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus cereus (strain AH187) GN=argC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.281e-35
Identity = 74/203 (36.45%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GA+GY G E++RLL  HPYF I  + +  + G+ I +V+PH  +  + T+  +   +     + VF   P G + E+  K L   LK++DLS DFR++D   YE+WY +     ++  +AVYGL+E  R +++NA L+ANPGC+ T+  L  +PL+++ +I+  +IIID KSGVSGAG+       + E+ + +  Y
Sbjct:    1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDAEEIVKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEEILSKAVYGLSEWKRSEVQNANLIANPGCFATAALLATLPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACC1 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus cereus (strain ATCC 10987) GN=argC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.281e-35
Identity = 74/203 (36.45%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GA+GY G E++RLL  HPYF I  + +  + G+ I +V+PH  +  + T+  +   +     + VF   P G + E+  K L   LK++DLS DFR++D   YE+WY +     ++  +AVYGL+E  R +++NA L+ANPGC+ T+  L  +PL+++ +I+  +IIID KSGVSGAG+       + E+ + +  Y
Sbjct:    1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDAEEIVKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEEILSKAVYGLSEWKRSEVQNANLIANPGCFATAALLATLPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_THERP (N-acetyl-gamma-glutamyl-phosphate reductase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=argC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 85/195 (43.59%), Postives = 118/195 (60.51%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQY-RNIIIDXKSGVSGAGRGAKEANLYSE 817
            V + +LG SGYTG E++RLL +HP   +  +T+  +AG+ + +V P+L  +    +  V       VD +F CLPHG T  I+  L +   IV DLSADFRLRD + YE+WY   H  PDL  +AVYGL E+ RE+I+NAR +A PGC  T++ L L PL +A LI     + ++ K G SGAG  A  A+ + E
Sbjct:    3 VSVAILGGSGYTGGELLRLLLSHPEVEVKQVTSRSRAGKFVHTVHPNLRKRT--ALKFVPPEALEPVDLLFACLPHGETAPIVDRLLELAPIVIDLSADFRLRDPAAYEQWYHWTHPRPDLLAQAVYGLPELHREEIRNARYIACPGCNSTTVILGLAPLFRAGLIDLDLPVTVECKVGSSGAGGEAGPASHHPE 195          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACC3 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus cereus (strain 03BB102) GN=argC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 75/203 (36.95%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSN-VDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GA+GY G E++RLL  HPYF I  + +  + G+ I +V+PH  +  + T+  +   +     + VF   P G + E+  K L   LK++DLS DFR++D   YE+WY +      + +EAVYGL+E  R +I+ A L+ANPGC+ T+  L ++PL+++ +I+  +IIID KSGVSGAG+       + E+ + +  Y
Sbjct:    1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDVEEIEKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEGVLREAVYGLSEWKRSEIQKANLIANPGCFATAALLAILPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACAN (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus anthracis GN=argC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 75/203 (36.95%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSN-VDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GA+GY G E++RLL  HPYF I  + +  + G+ I +V+PH  +  + T+  +   +     + VF   P G + E+  K L   LK++DLS DFR++D   YE+WY +      + +EAVYGL+E  R +I+ A L+ANPGC+ T+  L ++PL+++ +I+  +IIID KSGVSGAG+       + E+ + +  Y
Sbjct:    1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDVEEIEKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEGVLREAVYGLSEWKRSEIQKANLIANPGCFATAALLAILPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACAC (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=argC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 75/203 (36.95%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSN-VDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GA+GY G E++RLL  HPYF I  + +  + G+ I +V+PH  +  + T+  +   +     + VF   P G + E+  K L   LK++DLS DFR++D   YE+WY +      + +EAVYGL+E  R +I+ A L+ANPGC+ T+  L ++PL+++ +I+  +IIID KSGVSGAG+       + E+ + +  Y
Sbjct:    1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDVEEIEKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEGVLREAVYGLSEWKRSEIQKANLIANPGCFATAALLAILPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACAA (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus anthracis (strain A0248) GN=argC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 75/203 (36.95%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSN-VDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++ ++GA+GY G E++RLL  HPYF I  + +  + G+ I +V+PH  +  + T+  +   +     + VF   P G + E+  K L   LK++DLS DFR++D   YE+WY +      + +EAVYGL+E  R +I+ A L+ANPGC+ T+  L ++PL+++ +I+  +IIID KSGVSGAG+       + E+ + +  Y
Sbjct:    1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDVEEIEKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEGVLREAVYGLSEWKRSEIQKANLIANPGCFATAALLAILPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIY 203          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_ACAM1 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=argC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 81/207 (39.13%), Postives = 113/207 (54.59%), Query Frame = 2
Query:  227 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHL-ISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPK-SLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            S++ + +G++GASGY G ++ RLL  HP+  +  +  D  AG+    ++PHL   QDL       D        VF  LP+G   E+   L +   K++DLSAD+R  ++  YE+WYG      DL   AVYGL E+ R+ I  A LV  PGC+PT+  L L PL++  LI   + IID K+G SG GR AK   L +E    I  Y
Sbjct:    3 SQEDIPVGIIGASGYGGVQLTRLLLEHPHVHLAYLGGDSSAGRPFADLYPHLGFKQDLKVEAIDLDKVVERTQVVFLALPNGLAAEMAPTLVECGCKVLDLSADYRFTNLDTYEDWYGTKRQDRDLASTAVYGLPELYRQGISTASLVGCPGCFPTASLLALAPLLKQGLIDPNSAIIDAKTGTSGGGRQAKTHLLLAEANGSIGPY 209          
BLAST of CF835788 vs. ExPASy Swiss-Prot
Match: ARGC_BACHD (N-acetyl-gamma-glutamyl-phosphate reductase OS=Bacillus halodurans GN=argC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.890e-35
Identity = 79/203 (38.92%), Postives = 119/203 (58.62%), Query Frame = 2
Query:  239 VRIGLLGASGYTGAEIVRLLANHPYFGITLMTADRKAGQSIGSVFPHLISQDLPTMVAVK-DADFSNVDAVFCCLPHGTTQEIIKGLPK-SLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDXKSGVSGAGRGAKEANLYSEIAEGIYSY 841
            +++G++GA+GY G E++RLL+ HP     +  +  + G  +  ++PHL      T+ A+  +A  ++VD VF   P G + E+   L K  LK++DLS D R+ +   YE WY +        + AVYGLTE  R++I  A+++ANPGCYPT++ L L PL+Q   I  + IIID KSG SGAGR   +   +SE+ E    Y
Sbjct:    1 MKVGIVGATGYGGLELIRLLSQHPNVEEIICYSSSQEGLPLDDMYPHLSGNVRWTLKAIDPEAIRADVDTVFLATPPGVSGELTPDLVKLGLKVIDLSGDLRINEPDVYEAWYKRQAAPVGTIRGAVYGLTEWQRDEIAAAQIIANPGCYPTAVLLGLAPLVQQKWIDPKRIIIDAKSGTSGAGRNPSQITHFSEMNENFKIY 203          
The following BLAST results are available for this feature:
BLAST of CF835788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
ARGC_BACCQ2.281e-3536.45N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]
ARGC_BACC72.281e-3536.45N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]
ARGC_BACC12.281e-3536.45N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]
ARGC_THERP2.979e-3543.59N-acetyl-gamma-glutamyl-phosphate reductase OS=The... [more]
ARGC_BACC32.979e-3536.95N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]
ARGC_BACAN2.979e-3536.95N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]
ARGC_BACAC2.979e-3536.95N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]
ARGC_BACAA2.979e-3536.95N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]
ARGC_ACAM12.979e-3539.13N-acetyl-gamma-glutamyl-phosphate reductase OS=Aca... [more]
ARGC_BACHD3.890e-3538.92N-acetyl-gamma-glutamyl-phosphate reductase OS=Bac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01O07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835788 ID=CF835788; Name=CF835788; organism=Citrus sinensis; type=EST; length=841bp
TTTCAATTTAACCATCCAATCGGACCAATATAAAATAGTTTGATACAAAA
TGAGTGCAGCAACTTTCAGTTCACTTTGTTTCTCTCGAGGGTGTTTCTGG
AAGGATGAGGCTAAGAATTCTCCAAGGGTGATGAAGGGAAGTGGGAAAGT
AAAGATCAGTAGCATAAGAGGTTCTGCGACTTTGCCAACGAAAAGCTTGC
AGGTAGAAGATGGGAAGACTCAAAAGTCTGAAAAGCAAGTCCGCATTGGT
CTTCTTGGCGCAAGTGGTTACACTGGTGCAGAGATTGTACGACTCCTTGC
AAACCATCCATACTTTGGCATTACACTGATGACTGCTGATAGAAAAGCTG
GCCAATCAATTGGATCAGTGTTTCCTCATTTGATATCACAGGATTTGCCA
ACAATGGTTGCTGTCAAGGATGCAGATTTTTCAAATGTCGATGCAGTATT
TTGTTGTTTGCCTCATGGAACCACTCAGGAAATCATCAAAGGACTTCCGA
AGAGTTTAAAGATTGTTGATCTTTCTGCAGACTTTCGATTGCGTGATGTT
TCTGAGTACGAAGAGTGGTATGGACAACCACATATTGCACCTGATTTGCA
GAAAGAAGCTGTGTATGGTTTGACAGAAATTTCGAGGGAAGATATTAAAA
ATGCACGCCTTGTAGCTAATCCTGGTTGTTACCCAACATCCATTCAACTT
CCTCTTGTTCCCTTGATACAGGCTAATTTGATTCAATATAGAAATATCAT
TATTGACGNCAAATCTGGCGTGAGTGGAGCAGGACGTGGCGCTAAGGAGG
CTAATTTATACTCAGAAATAGCTGAAGGCATTTATTCTTAT
back to top