CF835790

Overview
NameCF835790
Unique NameCF835790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1132 contig Csv1_Contig1132:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: RSP1_CAEEL (Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 311
            R+Y+GRL SR   +D+E  F  YG+IRDV +K  F FVEF D RDA+DA + LNG+++ G R+I++++
Sbjct:    4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 45/100 (45.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   99 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 383
            G  R+YVG L +  R +DLE++F +YGRIR++++K       FAFV F DPRDA+DA Y  NG D    R+ VEF           R Y GRG  P  GR
Sbjct:   12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF----------PRTYGGRGGWPRGGR 101          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 380
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y+ +G D DG R+ VEF          S   +GRG   G G
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEF--------PRSGRGMGRGGFGGGG 103          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: RSP2_CAEEL (Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis elegans GN=rsp-2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+Y+GRL +R   RD+E  F  YG++ DV MK  F FV+F D RDADDA + LNG+++ G R+I+EF
Sbjct:    3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEF 69          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SRR55_DROME (Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  102 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 305
            G+R+YVG L    R RDLE  F  YGR RD+ +K  + FVEF D RDADDA Y LNG+++ G R++VE
Sbjct:    3 GSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE 70          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88          
The following BLAST results are available for this feature:
BLAST of CF835790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RSP1_CAEEL1.280e-1450.00Probable splicing factor, arginine/serine-rich 1 O... [more]
SFRS9_HUMAN1.672e-1445.00Splicing factor, arginine/serine-rich 9 OS=Homo sa... [more]
SFR1A_DANRE2.184e-1445.83Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
RSP2_CAEEL2.184e-1452.24Probable splicing factor, arginine/serine-rich 2 O... [more]
SRR55_DROME2.852e-1454.41Serine-arginine protein 55 OS=Drosophila melanogas... [more]
SFRS1_XENTR2.852e-1452.78Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
SFRS1_PONAB2.852e-1452.78Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG2.852e-1452.78Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE2.852e-1452.78Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN2.852e-1452.78Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835790 ID=CF835790; Name=CF835790; organism=Citrus sinensis; type=EST; length=709bp
AGGGAGAAGCTGCCCCCATTCGAATCGAAATCTAGGGTTTCTTCTTCTTA
ACTCTCTCGCCCTCAGCAGAAAAAATGCCTCGTTATGATGACCGGTACGG
TGGTACGCGTCTCTATGTTGGCCGCTTGGCTTCACGGACAAGATCACGCG
ATCTTGAGGAGATCTTCAGCAGATATGGGAGAATTCGCGATGTGGATATG
AAGCGTGACTTCGCCTTTGTTGAATTTAGCGACCCTCGCGATGCTGACGA
TGCAAGATATAGCTTAAATGGTCGGGATGTTGATGGAAGCCGTATCATTG
TGGAATTTGCAAGAGGGGGGCCACGTGGTCCTGGTGGATCTCGTGAGTAT
CTTGGTCGAGGCCCTCCTCCTGGATCTGGGCGCTGCTTCAATTGTGGGAT
TGATGGCCATTGGGCTCGAGACTGCAAGGCTGGAGACTGGAAGAATAAGT
GTTATCGCTGTGGTGAACGAGGCCACATAGAACGAAATTGTCAAAACAGT
CCAAAGAAGTTAAGGAGGCCTCGGAGTTATTCACGTTCTCCAAGTCCTCG
TCGTGGTAGAAGCAGGAGCCGTAGTTACAGTAGAGGCCGCAGCGACAGCC
GATCACGATCGCCTGTAAAGAGAGATAGGAGTGTTGAACGTTTTGAGAGA
AGAACAAGGAGCCCCCGAGACAGTAGGAGCCCTAAGCGTCGCAGAAATTC
ACACCATCA
back to top