CF835790

Overview
NameCF835790
Unique NameCF835790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 45/100 (45.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   99 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 383
            G  R+YVG L S  R +DLE++F +YGRIR++++K       FAFV F DPRDA+DA Y  NG D    R+ VEF           R Y GRG  P   R
Sbjct:   13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF----------PRTYGGRGGWPRGAR 102          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308
            R+YVG L    R++D+E++F +YG IRD+D+K       FAFVEF DPRDA+DA Y  +G D DG R+ VEF
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 87          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   99 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 383
            G  R+YVG L +  R +DLE++F +YGRIR++++K       FAFV F DPRDA+DA Y  NG D    R+ VEF           R Y GRG  P + R
Sbjct:   12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF----------PRAYGGRGGWPRASR 101          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: LARK_DROME (RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  105 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG---RCFNCGIDGHWARDC 425
            T+++VG L  +TR+ ++ E+F +YG + + D+ R++ FV      D  DA   LNGR VDG  + V+ +                 P PG G   +C+ CG  GHW+++C
Sbjct:   86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVR------------PKPGMGDPEQCYRCGRSGHWSKEC 183          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: RSP5_CAEEL (Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rsp-5 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGS--RIIVEFA 311
            RLY+G++    R RD+E     YG+I ++ MK  FAFV+F D RDA+DA + L+G+ ++GS  R++VE A
Sbjct:    3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72          
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/113 (39.82%), Postives = 59/113 (52.21%), Query Frame = 3
Query:  108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 434
            ++YVG L    R +++E+IF +YGRI+ VD+K      FAFVEF D RDA+DA  + +G + DG RI VEF               G GP    GR    G D H   D + G
Sbjct:   10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR-------------GVGPRGPGGRPLQDGGD-HRGGDFRGG 108          
The following BLAST results are available for this feature:
BLAST of CF835790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SFRS1_CHICK2.852e-1452.78Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_BOVIN2.852e-1452.78Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SFRS9_MOUSE3.725e-1445.00Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFR1B_DANRE3.725e-1452.78Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS9_RAT6.354e-1444.00Splicing factor, arginine/serine-rich 9 OS=Rattus ... [more]
LARK_DROME1.198e-1232.73RNA-binding protein lark OS=Drosophila melanogaste... [more]
RSP5_CAEEL2.260e-1145.71Probable splicing factor, arginine/serine-rich 5 O... [more]
RSP3_CAEEL6.575e-1139.82Probable splicing factor, arginine/serine-rich 3 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835790 ID=CF835790; Name=CF835790; organism=Citrus sinensis; type=EST; length=709bp
AGGGAGAAGCTGCCCCCATTCGAATCGAAATCTAGGGTTTCTTCTTCTTA
ACTCTCTCGCCCTCAGCAGAAAAAATGCCTCGTTATGATGACCGGTACGG
TGGTACGCGTCTCTATGTTGGCCGCTTGGCTTCACGGACAAGATCACGCG
ATCTTGAGGAGATCTTCAGCAGATATGGGAGAATTCGCGATGTGGATATG
AAGCGTGACTTCGCCTTTGTTGAATTTAGCGACCCTCGCGATGCTGACGA
TGCAAGATATAGCTTAAATGGTCGGGATGTTGATGGAAGCCGTATCATTG
TGGAATTTGCAAGAGGGGGGCCACGTGGTCCTGGTGGATCTCGTGAGTAT
CTTGGTCGAGGCCCTCCTCCTGGATCTGGGCGCTGCTTCAATTGTGGGAT
TGATGGCCATTGGGCTCGAGACTGCAAGGCTGGAGACTGGAAGAATAAGT
GTTATCGCTGTGGTGAACGAGGCCACATAGAACGAAATTGTCAAAACAGT
CCAAAGAAGTTAAGGAGGCCTCGGAGTTATTCACGTTCTCCAAGTCCTCG
TCGTGGTAGAAGCAGGAGCCGTAGTTACAGTAGAGGCCGCAGCGACAGCC
GATCACGATCGCCTGTAAAGAGAGATAGGAGTGTTGAACGTTTTGAGAGA
AGAACAAGGAGCCCCCGAGACAGTAGGAGCCCTAAGCGTCGCAGAAATTC
ACACCATCA
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