CF835790
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308 R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G D DG R+ VEF Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308 R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G D DG R+ VEF Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14 Identity = 45/100 (45.00%), Postives = 56/100 (56.00%), Query Frame = 3 Query: 99 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 383 G R+YVG L S R +DLE++F +YGRIR++++K FAFV F DPRDA+DA Y NG D R+ VEF R Y GRG P R Sbjct: 13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF----------PRTYGGRGGWPRGAR 102
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 308 R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G D DG R+ VEF Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 87
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14 Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 3 Query: 99 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 383 G R+YVG L + R +DLE++F +YGRIR++++K FAFV F DPRDA+DA Y NG D R+ VEF R Y GRG P + R Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF----------PRAYGGRGGWPRASR 101
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: LARK_DROME (RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 105 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG---RCFNCGIDGHWARDC 425 T+++VG L +TR+ ++ E+F +YG + + D+ R++ FV D DA LNGR VDG + V+ + P PG G +C+ CG GHW+++C Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVR------------PKPGMGDPEQCYRCGRSGHWSKEC 183
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: RSP5_CAEEL (Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rsp-5 PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11 Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 3 Query: 108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGS--RIIVEFA 311 RLY+G++ R RD+E YG+I ++ MK FAFV+F D RDA+DA + L+G+ ++GS R++VE A Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
BLAST of CF835790 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11 Identity = 45/113 (39.82%), Postives = 59/113 (52.21%), Query Frame = 3 Query: 108 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 434 ++YVG L R +++E+IF +YGRI+ VD+K FAFVEF D RDA+DA + +G + DG RI VEF G GP GR G D H D + G Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR-------------GVGPRGPGGRPLQDGGD-HRGGDFRGG 108 The following BLAST results are available for this feature:
BLAST of CF835790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835790 ID=CF835790; Name=CF835790; organism=Citrus sinensis; type=EST; length=709bpback to top |