CF835794

Overview
NameCF835794
Unique NameCF835794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835794_ssr388 microsatellite CF835794_ssr388:388..399. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:51..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835794 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  312 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVA 626
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIA 106          
BLAST of CF835794 vs. ExPASy Swiss-Prot
Match: RS5_GRAFK (30S ribosomal protein S5 OS=Gramella forsetii (strain KT0803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  303 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVA 626
            G +LKD ++ +  V K T+ G+   F A VVVGD +G VG G+  SKEVA AI  A+  AK ++  IP+ +G          T+P +  GK G   V ++PA  G GI+A
Sbjct:   15 GLELKDRLVGVQRVTKVTKGGRAFGFSAIVVVGDENGVVGQGLGKSKEVADAISKAVEDAKKNLVRIPLHKG----------TLPHEQKGKYGGARVMLLPAAAGTGIIA 114          
BLAST of CF835794 vs. ExPASy Swiss-Prot
Match: RS5_ENTFA (30S ribosomal protein S5 OS=Enterococcus faecalis GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  309 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVA 626
            +L+D V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G   + M PA  G+G+ A
Sbjct:   10 ELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEV------PMVG--STIPHEVIGVFGGGRILMKPAVEGSGVAA 107          
The following BLAST results are available for this feature:
BLAST of CF835794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS5_CLOP14.061e-1140.0030S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_GRAFK6.927e-1140.0030S ribosomal protein S5 OS=Gramella forsetii (str... [more]
RS5_ENTFA9.047e-1140.5730S ribosomal protein S5 OS=Enterococcus faecalis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835794 ID=CF835794; Name=CF835794; organism=Citrus sinensis; type=EST; length=632bp
CGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAACA
CACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTG
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGG
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