CF835803

Overview
NameCF835803
Unique NameCF835803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1134 contig Csv1_Contig1134:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC6_ORYSJ (Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.759e-64
Identity = 130/206 (63.11%), Postives = 157/206 (76.21%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVS-PQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG------PDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 598
            V  P EPPG+VLSA TS+ LP + PQR+F++LRDE+ R +WDIL+NG  MQEM HIAKGQ HGN VSLLR +A + NQ++MLILQETCTD++GSLVVYAPVD+ +MHVVMNGGDSAYV+LLPSGFAI+PDG      P      +                   L+TVAFQILVN+LPTAKLTVESV+TV+NL+SCT+QKIK+ALQ
Sbjct:  661 VGAPGEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGNAVSLLRPNATSGNQNNMLILQETCTDSSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSGFAILPDGHNNGASPSPAEVGSGASPNSAAGGGGGSNNTGSLVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQ 866          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ATML1_ARATH (Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.050e-63
Identity = 128/212 (60.38%), Postives = 155/212 (73.11%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG-----------PDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCE 604
            +DDP  PPGIVLSAATS W+PV+P+R+F+FLRDE  RSEWDILSNGG +QEMAHIA G+D GN VSLLR ++ N+ QS+MLILQE+CTDA+GS V+YAPVDI AM+VV++GGD  YVALLPSGFAI+PDG               G                      LLTVAFQILV+S+PTAKL++ SV TVN+LI CTV++IKAAL C+
Sbjct:  549 MDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNSVSLLRVNSGNSGQSNMLILQESCTDASGSYVIYAPVDIIAMNVVLSGGDPDYVALLPSGFAILPDGSARGGGGSANASAGAGVEGGGEGNNLEVVTTTGSCGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAALACD 760          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG7_ARATH (Homeobox-leucine zipper protein HDG7 OS=Arabidopsis thaliana GN=HDG7 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.032e-60
Identity = 122/195 (62.56%), Postives = 144/195 (73.85%), Query Frame = 2
Query:   14 VEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 598
            +EP GIVLSAATSLWLPV+ QRLF FL D + R++WDILSNG  M+    + KGQ  G+CVSLLRA+  + N+SSMLILQET  D +G+LVVYAPVDIP+M+ VM+GGDSAYVALLPSGF+I+PDG  S                        LLTV FQILVNSLPTAKL VESVETVNNLI+CT+ KI+AAL+
Sbjct:  490 LEPSGIVLSAATSLWLPVTQQRLFEFLCDGKCRNQWDILSNGASMENTLLVPKGQQEGSCVSLLRAAGNDQNESSMLILQETWNDVSGALVVYAPVDIPSMNTVMSGGDSAYVALLPSGFSILPDGSSSSS-----DQFDTDGGLVNQESKGCLLTVGFQILVNSLPTAKLNVESVETVNNLIACTIHKIRAALR 679          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC8_ORYSJ (Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp. japonica GN=ROC8 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 112/209 (53.59%), Postives = 146/209 (69.86%), Query Frame = 2
Query:    8 DPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG---------PDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            DP +P G+VLSAATS+WLPV    +F F+RDE  RS+WD+LS+G  +QE++ I  G + GNC+SLLR   +NA+Q+SMLILQE+CTDA+GSLVVY+P+DIPA +VVM+G D + + LLPSGF I+PDG           S GPLA                   ++TVAFQILV+SLP++KL  ESV TVN LI+ TV++IKAAL C +
Sbjct:  504 DPGQPNGVVLSAATSIWLPVPCDHVFAFVRDENTRSQWDVLSHGNQVQEVSRIPNGSNPGNCISLLR--GLNASQNSMLILQESCTDASGSLVVYSPIDIPAANVVMSGEDPSSIPLLPSGFTILPDGRPGSAAGASTSSAGPLA-----AARGGGGGGAGGGSVVTVAFQILVSSLPSSKLNAESVATVNGLITTTVEQIKAALNCSA 705          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG12_ARATH (Homeobox-leucine zipper protein HDG12 OS=Arabidopsis thaliana GN=HDG12 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.051e-51
Identity = 100/198 (50.51%), Postives = 137/198 (69.19%), Query Frame = 2
Query:   17 EPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTD-AAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            EP G+VL AATS WLP+SPQ +FNFL+DER R +WD+LSNG  +QE+AHI  G + GNC+S+LR    +++Q++MLILQE+C D ++ +LV+Y PVD+PA+++ M+G D++Y+ +LPSGFAI PDG    G                      L+TV FQI+V+ L  AKL +ES+ETVNNLI+ TV +IK  L C S
Sbjct:  508 EPNGMVLCAATSFWLPISPQNVFNFLKDERTRPQWDVLSNGNSVQEVAHITNGSNPGNCISVLRGFNASSSQNNMLILQESCIDSSSAALVIYTPVDLPALNIAMSGQDTSYIPILPSGFAISPDGSSKGG--------------------GSLITVGFQIMVSGLQPAKLNMESMETVNNLINTTVHQIKTTLNCPS 685          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG11_ARATH (Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.244e-48
Identity = 103/194 (53.09%), Postives = 132/194 (68.04%), Query Frame = 2
Query:   17 EPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQS-SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL 595
            EP G VL AAT+ WLP SPQ +FNFL+DER R +WD+LSNG  +QE+AHI+ G   GNC+S+LR S  NA  S +MLILQE+ TD++G+ VVY+PVD+ A+++ M+G D +Y+ LL SGF I PDG  S                        L+TV FQI+V++LPTAKL +ESVETVNNLI  TV +IK AL
Sbjct:  527 EPNGTVLCAATTFWLPNSPQNVFNFLKDERTRPQWDVLSNGNAVQEVAHISNGSHPGNCISVLRGS--NATHSNNMLILQESSTDSSGAFVVYSPVDLAALNIAMSGEDPSYIPLLSSGFTISPDGNGSNS-----EQGGASTSSGRASASGSLITVGFQIMVSNLPTAKLNMESVETVNNLIGTTVHQIKTAL 713          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HGL2_ARATH (Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 5.063e-42
Identity = 91/199 (45.73%), Postives = 129/199 (64.82%), Query Frame = 2
Query:    8 DPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCE 604
            DP EP G+++ A++SLWLPVSP  LF+F RDE  R EWD LSNG  +Q +A+++KGQD GN V++     + + + S+ +LQ++ T++  S+VVYAPVDI    +V+ G D + + +LPSGF+I+PDG +SR PL                    LLT+A Q L+N  P AKL +ESVE+V NL+S T+  IK +LQ E
Sbjct:  556 DPGEPTGVIVCASSSLWLPVSPALLFDFFRDEARRHEWDALSNGAHVQSIANLSKGQDRGNSVAI---QTVKSREKSIWVLQDSSTNSYESVVVYAPVDINTTQLVLAGHDPSNIQILPSGFSIIPDGVESR-PLV-----ITSTQDDRNSQGGSLLTLALQTLINPSPAAKLNMESVESVTNLVSVTLHNIKRSLQIE 745          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG3_ARATH (Homeobox-leucine zipper protein HDG3 OS=Arabidopsis thaliana GN=HDG3 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.628e-40
Identity = 89/203 (43.84%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMN-GGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            V+DP +PPG+++ AATS WLP  P  +F+FLR+   R  WD+L NG  M ++A I  G D  NC SLLR    + ++S M+I+QET TD   S V+YAPVD+ +M + ++ GGD  +V +LPSGFAI PDG    G                      LLT++FQ+LV S P A+L+V SV T  NLI  TV++IK    C++
Sbjct:  540 VNDPGKPPGVIICAATSFWLPAPPNTVFDFLREATHRHNWDVLCNGEMMHKIAEITNGIDKRNCASLLRHG--HTSKSKMMIVQETSTDPTASFVLYAPVDMTSMDITLHGGGDPDFVVILPSGFAIFPDGTGKPG----------------GKEGGSLLTISFQMLVESGPEARLSVSSVATTENLIRTTVRRIKDLFPCQT 724          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG5_ARATH (Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana GN=HDG5 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 77/197 (39.09%), Postives = 117/197 (59.39%), Query Frame = 2
Query:    8 DPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRAS-AINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL 595
            +P +P G+VL A ++ WLP S  ++F+ +RD+  +S  ++L NG    E+AHIA G   GNC+SLLR + A N+  +  L+LQE+C D +GSL+VY+ VD+ ++   MNG DS+ + +LP GF+IVP  P                          LLTV  Q+L +++PTAK  + +V T+NN +  TV +I +AL
Sbjct:  616 EPGQPTGVVLCAVSTTWLPFSHHQVFDLIRDQHHQSLLEVLFNGNSPHEVAHIANGSHPGNCISLLRINVASNSWHNVELMLQESCIDNSGSLIVYSTVDVDSIQQAMNGEDSSNIPILPLGFSIVPVNPPE------------GISVNSHSPPSCLLTVGIQVLASNVPTAKPNLSTVTTINNHLCATVNQITSAL 800          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: FWA_ARATH (Homeobox-leucine zipper protein HDG6 OS=Arabidopsis thaliana GN=HDG6 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.101e-32
Identity = 83/202 (41.09%), Postives = 115/202 (56.93%), Query Frame = 2
Query:    2 VDDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            V++P E  GIVLSA+TS+WLPV+   LF F+     R EWDIL+N   M+E   I K + HGN +SLL+        + ML+LQE   DA+G++VVYAPV+  ++ +V  G +S  V  LPSGF+IVPDG +                         LLT   QILV   PTA L   +V++V  L++ T+ KIK+AL  ++
Sbjct:  503 VNEPGELTGIVLSASTSVWLPVNQHTLFAFISHLSFRHEWDILTNDTTMEETIRIQKAKRHGNIISLLKIV-----NNGMLVLQEIWNDASGAMVVYAPVETNSIELVKRGENSDSVKFLPSGFSIVPDGVNG-------------SYHRGNTGGGCLLTFGLQILVGINPTAALIQGTVKSVETLMAHTIVKIKSALDLQT 686          
The following BLAST results are available for this feature:
BLAST of CF835803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ROC6_ORYSJ2.759e-6463.11Homeobox-leucine zipper protein ROC6 OS=Oryza sati... [more]
ATML1_ARATH3.050e-6360.38Homeobox-leucine zipper protein MERISTEM L1 OS=Ara... [more]
HDG7_ARATH7.032e-6062.56Homeobox-leucine zipper protein HDG7 OS=Arabidopsi... [more]
ROC8_ORYSJ1.284e-5353.59Homeobox-leucine zipper protein ROC8 OS=Oryza sati... [more]
HDG12_ARATH2.051e-5150.51Homeobox-leucine zipper protein HDG12 OS=Arabidops... [more]
HDG11_ARATH1.244e-4853.09Homeobox-leucine zipper protein HDG11 OS=Arabidops... [more]
HGL2_ARATH5.063e-4245.73Homeobox-leucine zipper protein GLABRA 2 OS=Arabid... [more]
HDG3_ARATH3.628e-4043.84Homeobox-leucine zipper protein HDG3 OS=Arabidopsi... [more]
HDG5_ARATH3.289e-3339.09Homeobox-leucine zipper protein HDG5 OS=Arabidopsi... [more]
FWA_ARATH8.101e-3241.09Homeobox-leucine zipper protein HDG6 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835803 ID=CF835803; Name=CF835803; organism=Citrus sinensis; type=EST; length=678bp
CGTTGACGATCCCGTTGAGCCTCCAGGAATCGTGTTAAGCGCTGCCACCT
CCCTTTGGCTGCCGGTGTCTCCTCAAAGACTCTTCAATTTTCTACGTGAT
GAGCGGCTTAGAAGCGAGTGGGATATTTTGTCGAACGGTGGGCCCATGCA
GGAGATGGCCCACATTGCTAAAGGACAAGATCACGGCAACTGCGTCTCCC
TTCTACGTGCTAGTGCCATAAACGCAAACCAGAGCAGCATGTTGATACTA
CAGGAGACATGCACAGACGCCGCTGGGTCGCTTGTCGTCTACGCGCCCGT
TGACATCCCGGCCATGCACGTGGTGATGAACGGTGGTGATTCTGCCTACG
TGGCTCTCCTTCCTTCTGGATTTGCAATTGTTCCAGATGGTCCAGACTCA
CGAGGGCCCCTGGCTAATGGCCCCACAAGTGGGAATGGGAGCAACGGTGG
GTCACAGAGAGTGGGTGGCTCGCTTTTAACAGTGGCCTTCCAAATCTTGG
TGAATAGTCTTCCGACGGCCAAGCTTACGGTAGAATCTGTGGAGACGGTC
AACAATCTAATATCATGCACTGTTCAGAAGATCAAGGCCGCTCTTCAATG
TGAAAGCTGATACGATAATGGAGTTGGTGTTTGGTTTTTTAACTTGACAC
GATGGGGGTGTTTTGCTTTGTGCATGGC
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