CF835803

Overview
NameCF835803
Unique NameCF835803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSJ (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. japonica GN=ROC3 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = 2
Query:    8 DPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDA-AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP-----------------------DGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 598
            +P +P G++L+A ++ WLP + Q++F  L DE+ R + +ILSNGG + E+AHIA G    NC+SLLR +A  N++Q+  L+LQE+ T    GSLVV+A VD+ A+ V M+G D +Y+ LLP GFAI P                       +G  S  P                     LLTV  Q+L +++P+AKL + SV  +N+ +   + +I AAL+
Sbjct:  648 EPGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPLLPLGFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTP-PRNSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINSHVCNAIHQITAALK 868          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSI (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. indica GN=ROC3 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = 2
Query:    8 DPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDA-AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP-----------------------DGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 598
            +P +P G++L+A ++ WLP + Q++F  L DE+ R + +ILSNGG + E+AHIA G    NC+SLLR +A  N++Q+  L+LQE+ T    GSLVV+A VD+ A+ V M+G D +Y+ LLP GFAI P                       +G  S  P                     LLTV  Q+L +++P+AKL + SV  +N+ +   + +I AAL+
Sbjct:  648 EPGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPLLPLGFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTP-PRNSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINSHVCNAIHQITAALK 868          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: ROC9_ORYSJ (Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp. japonica GN=ROC9 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 77/204 (37.75%), Postives = 113/204 (55.39%), Query Frame = 2
Query:    5 DDPVEPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQ-SSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGF-AIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVN-SLPTAKLTVESVETVNNLISCTVQKIKAALQCES 607
            DDP EP G++  AA S WLPV+P  L + LRDE  R EWD++  G  +Q   ++AKG+D  NCV+   A      +     +LQ+ CT+   S + YA +D  A+  V+ G DS+ V LLP GF +++PDG +S+  +                    L+TVAFQ+  + S   A L+ +SVE V  L+S T++ I+ AL C+S
Sbjct:  613 DDPGEPQGLIACAAASTWLPVNPTALLDLLRDESRRPEWDVMLPGKSVQSRVNLAKGKDRTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTIAYAAIDAAALQPVIAGHDSSGVHLLPCGFISVMPDGLESKPAV-----ITASRRGGEASGAGSLVTVAFQVPASPSAAAATLSPDSVEAVTVLVSSTLRNIRKALGCDS 811          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG8_ARATH (Homeobox-leucine zipper protein HDG8 OS=Arabidopsis thaliana GN=HDG8 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 76/209 (36.36%), Postives = 118/209 (56.46%), Query Frame = 2
Query:   17 EPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETC-----------TDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLP--TAKLTVESVETVNNLISCTVQKIKAALQC 601
            +PPGIV+SA++SL +P++P ++F FL++   R +WDILS G  + E+A I  G    NCV++LR    +   +  +++Q++C            DA G ++VYAP+D+  MH  ++G  D +++ +LPSGF I  DG  S                        LLTVAFQILV+     + ++  +SV+TV+ LIS T+Q+IK  L C
Sbjct:  505 QPPGIVVSASSSLAIPLTPLQVFAFLQNLDTRQQWDILSYGTVVNEIARIVTGSSETNCVTILRVHPTHEENNDKMVVQDSCKDDMLMLQDCYMDALGGMIVYAPMDMATMHFAVSGEVDPSHIPILPSGFVISSDGRRS-----------------TVEDGGTLLTVAFQILVSGKANRSREVNEKSVDTVSALISSTIQRIKGLLNC 696          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG9_ARATH (Homeobox-leucine zipper protein HDG9 OS=Arabidopsis thaliana GN=HDG9 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 78/200 (39.00%), Postives = 111/200 (55.50%), Query Frame = 2
Query:   17 EPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNS---LPTAKLTVESVETVNNLISCTVQKIKAALQCE 604
            +PPG+++ A +SL LP+ P ++++FL++  +R +WD+L +G P  E A    G +  N VS L  S  + N + ++ILQ++  DA G +V YAP+D+      ++G  D   + +LPSGF I  DG  S G                      LLTVAFQILV+     P   L V S  TVN LIS TVQ+IKA L+CE
Sbjct:  535 QPPGLIVCAGSSLSLPLPPVQVYDFLKNLEVRHQWDVLCHGNPATEAARFVTGSNPRNTVSFLEPSIRDIN-TKLMILQDSFKDALGGMVAYAPMDLNTACAAISGDIDPTTIPILPSGFMISRDGRPSEG--------------EAEGGSYTLLTVAFQILVSGPSYSPDTNLEV-SATTVNTLISSTVQRIKAMLKCE 718          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG4_ARATH (Homeobox-leucine zipper protein HDG4 OS=Arabidopsis thaliana GN=HDG4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 74/191 (38.74%), Postives = 109/191 (57.07%), Query Frame = 2
Query:   26 GIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASA-INANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL 595
            G+V  A +   LP S Q++F+ LRD +  S+ +IL  G   QE+AHIA G   GN +SLLR +   N++ +  L+LQETCTD +GSL+VY+ VD  A+ + MNG D + + LLP GF++VP  P                          LLTVA Q+L +++ T +L + +V  +N+ I  TV +I +AL
Sbjct:  525 GLVPCAVSVTLLPYSHQQVFDLLRDNQRLSQLEILFMGSSFQEVAHIANGSHLGNSISLLRINVESNSSHNVELMLQETCTDNSGSLLVYSTVDPVAVQLAMNGEDPSEIPLLPVGFSVVPVNPSD------------GVEGSSVSSPSCLLTVAIQVLGSNVTTERLDLSTVSVINHRICATVNRITSAL 703          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: HDG10_ARATH (Homeobox-leucine zipper protein HDG10 OS=Arabidopsis thaliana GN=HDG10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.253e-24
Identity = 70/199 (35.18%), Postives = 108/199 (54.27%), Query Frame = 2
Query:   17 EPPGIVLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVN--SLPTAKLTVESVETVNNLISCTVQKIKAALQCE 604
            +PPG+++ A +SL LP+ P ++++FLR+  +R +WD+   G P+ E A    G D  N V+ L+ S++   +  ++ILQ+   DA G +VVYAP+++   +  ++G  D + + +LPSGF I  D   S   +                    LLT+AFQI V   S  T     +S  TVN L+S  VQ+IKA L CE
Sbjct:  526 QPPGLIVCAGSSLSLPLPPLQVYDFLRNLEVRHQWDVHCQGNPVTEAARFVTGPDQKNNVTFLQPSSV--GEYKLMILQDGFIDALGGMVVYAPMNLNTAYSAISGQVDPSTIPILPSGFIISRDSHPSSSEV--------------DGGSMTLLTLAFQIFVTGPSYYTDLNLKDSATTVNTLVSSAVQRIKAMLNCE 708          
BLAST of CF835803 vs. ExPASy Swiss-Prot
Match: TF1_ORYSJ (Homeobox-leucine zipper protein TF1 OS=Oryza sativa subsp. japonica GN=TF1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 56/204 (27.45%), Postives = 95/204 (46.57%), Query Frame = 2
Query:   32 VLSAATSLWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRAS-AINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVM---------NGGDSAYVALLPSGFAIVPD---GPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCE 604
            +LS   SL LP+  ++ F+ LR+   R +WD+L +G  ++E   IA+G  + + V++L    A   ++   +ILQ    DA+GS +VY+ +D   M+ ++          GG S Y    P+GF+++PD     DS G                      L+T+ FQI V      ++   S  +   L++ T+  +K  L  E
Sbjct:  511 ILSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVLHCKRAGREDRGRTMILQNNGYDASGSFMVYSQIDSELMNTMVLSPSDLPPGRGGPSLY----PTGFSLLPDVEAAQDSSG-------------IALGEVGGTLMTMGFQIPVKLASGDRMYSRSAASAIRLMTDTIALVKKTLMNE 697          
The following BLAST results are available for this feature:
BLAST of CF835803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ROC3_ORYSJ3.079e-3136.94Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC3_ORYSI3.079e-3136.94Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC9_ORYSJ9.903e-3037.75Homeobox-leucine zipper protein ROC9 OS=Oryza sati... [more]
HDG8_ARATH2.206e-2936.36Homeobox-leucine zipper protein HDG8 OS=Arabidopsi... [more]
HDG9_ARATH5.434e-2839.00Homeobox-leucine zipper protein HDG9 OS=Arabidopsi... [more]
HDG4_ARATH1.581e-2738.74Homeobox-leucine zipper protein HDG4 OS=Arabidopsi... [more]
HDG10_ARATH1.253e-2435.18Homeobox-leucine zipper protein HDG10 OS=Arabidops... [more]
TF1_ORYSJ1.216e-1127.45Homeobox-leucine zipper protein TF1 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835803 ID=CF835803; Name=CF835803; organism=Citrus sinensis; type=EST; length=678bp
CGTTGACGATCCCGTTGAGCCTCCAGGAATCGTGTTAAGCGCTGCCACCT
CCCTTTGGCTGCCGGTGTCTCCTCAAAGACTCTTCAATTTTCTACGTGAT
GAGCGGCTTAGAAGCGAGTGGGATATTTTGTCGAACGGTGGGCCCATGCA
GGAGATGGCCCACATTGCTAAAGGACAAGATCACGGCAACTGCGTCTCCC
TTCTACGTGCTAGTGCCATAAACGCAAACCAGAGCAGCATGTTGATACTA
CAGGAGACATGCACAGACGCCGCTGGGTCGCTTGTCGTCTACGCGCCCGT
TGACATCCCGGCCATGCACGTGGTGATGAACGGTGGTGATTCTGCCTACG
TGGCTCTCCTTCCTTCTGGATTTGCAATTGTTCCAGATGGTCCAGACTCA
CGAGGGCCCCTGGCTAATGGCCCCACAAGTGGGAATGGGAGCAACGGTGG
GTCACAGAGAGTGGGTGGCTCGCTTTTAACAGTGGCCTTCCAAATCTTGG
TGAATAGTCTTCCGACGGCCAAGCTTACGGTAGAATCTGTGGAGACGGTC
AACAATCTAATATCATGCACTGTTCAGAAGATCAAGGCCGCTCTTCAATG
TGAAAGCTGATACGATAATGGAGTTGGTGTTTGGTTTTTTAACTTGACAC
GATGGGGGTGTTTTGCTTTGTGCATGGC
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