CF835804

Overview
NameCF835804
Unique NameCF835804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.904e-62
Identity = 115/186 (61.83%), Postives = 139/186 (74.73%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 749
            RK+IY R K Y KEY    ++ IR+ R A+  G +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED+IHEI TVG +FK  NNFLWPF              H+VEGGD
Sbjct:   45 RKIIYERAKAYHKEYRHMYRQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVEGGD 230          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.018e-62
Identity = 113/186 (60.75%), Postives = 146/186 (78.49%), Query Frame = 3
Query:  195 KLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGG 746
            K+I++R ++Y KEY E ++E IRL+REAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +GYPNL SV++L+YKRGYGK+NKQRI L+DN+IIE+ALG++GIICMEDLIHEI TVGP FK+A+NFLWPF            R   HY+EGG
Sbjct:   48 KVIFSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGG 233          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.079e-58
Identity = 105/182 (57.69%), Postives = 136/182 (74.73%), Query Frame = 3
Query:  204 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 749
            + R ++Y +EY   QKE +RLKREA+ KG FYV  E K+ F++RIRGIN + PK +K LQ+LRLRQI NGVF+K+NKATL +L  +EPYV +GYPN K++ +L+YKRGY K++  R+ +TDN+I+EQ+LG+  IIC+EDL HEI TVGPHFKEA NFLWPF             NH+VEGGD
Sbjct:   47 FKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGD 228          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.002e-57
Identity = 114/215 (53.02%), Postives = 146/215 (67.91%), Query Frame = 3
Query:  108 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGD 749
            LKKKK                       R+LI  R + Y  EY + ++E I L R+A+ +G +YV  E KL+F+IRIRGIN + PK +KI+QLLRL QI NGVF+K NKAT  ML  VEPYVTYG PNLK+V+EL+YKRG+GK+NKQRIAL+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NF+WPF            +  H++EGGD
Sbjct:   21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGD 235          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.141e-56
Identity = 103/187 (55.08%), Postives = 138/187 (73.80%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGG 746
            R  I  R   Y KEY+  ++ +I+ KREAK  G +YV  + KL+F+IRI+GIN + PK +K+LQLLRL QI +GVF+KV KAT  +L  VEPYV YGYP+  ++++L+YKRGYGK+NKQRIAL++NSI+E  LG++GII ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG
Sbjct:   40 RAAILERNAAYHKEYETAERAVIQAKREAKANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGG 226          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 9.657e-56
Identity = 106/181 (58.56%), Postives = 134/181 (74.03%), Query Frame = 3
Query:  210 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 749
            R ++Y  EY + ++  I+L+R AK +  FYV  EAKL F++RIRGIN V PK +K+LQL RLRQI NGVF+K+NKAT+NML   EPY+T+GYPNLKSV+ELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+EDL+HEI TVGP+FK A+NFLWPF             NHYV GGD
Sbjct:   56 RAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGD 236          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.657e-56
Identity = 99/187 (52.94%), Postives = 141/187 (75.40%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGD 749
            RK+I++R   Y KEY + ++ +I+ KR+AK  G +YV+ + KL+F++RI+GIN + PK +K+LQLLRL QI  GVF+++ KAT  +L   EPY+ YGYPNL +++ L+YKRG+GK+NKQRIAL+DN+IIE  LG++GI+ +EDLIHEI TVGP+FK+ANNFLWPF            +  H+++GGD
Sbjct:   39 RKIIFDRAAAYQKEYTDAERAVIKAKRDAKAAGSYYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGD 225          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 6.259e-55
Identity = 96/187 (51.34%), Postives = 138/187 (73.80%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGG 746
            R +I  R   Y KEY+  ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG
Sbjct:   41 RAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGG 227          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 6.259e-55
Identity = 96/187 (51.34%), Postives = 138/187 (73.80%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGG 746
            R +I  R   Y KEY+  ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG
Sbjct:   41 RAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGG 227          
BLAST of CF835804 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 8.175e-55
Identity = 101/182 (55.49%), Postives = 133/182 (73.08%), Query Frame = 3
Query:  204 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 749
            + R ++Y  EY + ++E IRL R AK  G FYV P AK+ F+IRIRGIN V PK +K+L+LLRL Q+ NGVF+K+NKA++NML  VEPYV YG+PNLKS+KELIYKRG+ K++ QRI LT N ++E+ LG+ GIIC+ED+IHEI T G HFK+ NN LWPF            +  +++GGD
Sbjct:   49 FKRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGD 230          
The following BLAST results are available for this feature:
BLAST of CF835804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_CHICK6.904e-6261.8360S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7_YARLI9.018e-6260.7560S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_CAEEL2.079e-5857.6960S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7C_SCHPO3.002e-5753.0260S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7_ASHGO1.141e-5655.0860S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7_DROME9.657e-5658.5660S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_DEBHA9.657e-5652.9460S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7B_YEAST6.259e-5551.3460S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST6.259e-5551.3460S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7_DICDI8.175e-5555.4960S ribosomal protein L7 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835804 ID=CF835804; Name=CF835804; organism=Citrus sinensis; type=EST; length=751bp
CGAAGCCAGAACCCCTTTGTGAAGAAGATAGATCTAAAAGACCTCTAAGA
ACAACCTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCAGA
GTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGA
AGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTC
ATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAA
AGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATG
TCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCAAT
GCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACA
GATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGC
TGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGT
GTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAG
GATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATG
GAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCT
CACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCACC
ATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATG
C
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