CF835821

Overview
NameCF835821
Unique NameCF835821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 8.816e-84
Identity = 142/169 (84.02%), Postives = 163/169 (96.45%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM+GF PLTSRGSQQY +LTVPELTQQ +D+KNMMCAADPRHGRYLT + MFRG+MSTKEVDEQM+NV NKNSSYFVEWIPNNVK+S+CDIPP+GLKM++TF+GN+T+IQE+++RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB4_MOUSE (Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1 SV=3)

HSP 1 Score: 309.301 bits (791), Expect = 1.504e-83
Identity = 145/169 (85.80%), Postives = 162/169 (95.86%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPPRGLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.504e-83
Identity = 145/169 (85.80%), Postives = 162/169 (95.86%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPPRGLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.504e-83
Identity = 145/169 (85.80%), Postives = 162/169 (95.86%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPPRGLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.504e-83
Identity = 145/169 (85.80%), Postives = 162/169 (95.86%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPPRGLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.964e-83
Identity = 141/169 (83.43%), Postives = 163/169 (96.45%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM+GF PLTSRGSQQY +LTVPELTQQ +D+KNMMCAADPRHGRYLT + MFRG+MSTKEVDEQM+NV NKNSSYFVEWIPNNVK+S+CDIPP+GLKM++TF+GN+T+IQE+++RV+EQFT+MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_XENLA (Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.964e-83
Identity = 144/169 (85.21%), Postives = 162/169 (95.86%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNK+SSYFVEWIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKSSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.565e-83
Identity = 144/169 (85.21%), Postives = 161/169 (95.27%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSS+FVEWIPNN K++VCDIPPRGLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_DROHY (Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.565e-83
Identity = 144/169 (85.21%), Postives = 161/169 (95.27%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSS+FVEWIPNN K++VCDIPPRGLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.565e-83
Identity = 144/169 (85.21%), Postives = 161/169 (95.27%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVN++PFPRLHFFM GF PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSS+FVEWIPNN K++VCDIPPRGLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CF835821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBB6_ECTVR8.816e-8484.02Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]
TBB4_MOUSE1.504e-8385.80Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1... [more]
TBB4_MACFA1.504e-8385.80Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]
TBB4_HUMAN1.504e-8385.80Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1... [more]
TBB4_BOVIN1.504e-8385.80Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S... [more]
TBB5_ECTVR1.964e-8383.43Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]
TBB2_XENLA1.964e-8385.21Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE... [more]
TBB2_DROME2.565e-8385.21Tubulin beta-2 chain OS=Drosophila melanogaster GN... [more]
TBB2_DROHY2.565e-8385.21Tubulin beta-2 chain OS=Drosophila hydei GN=betaTu... [more]
TBB2_DROER2.565e-8385.21Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835821 ID=CF835821; Name=CF835821; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTGATCAAACTAACAATTCTTTATTCAAATGCTCGAA
AAGAACAACAGACAATATCGTCTTAAAAGACAGAAATTGTAAACAACAAC
AAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTTTTTCT
GTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGAAGCTCTCCTCA
AGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGATATTG
TTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGTGAACT
CCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCTTACGC
CGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCTTGGAT
GGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACGTGGTG
GAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCACAAAG
TAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACCTCTTT
GGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTAGCGCCCAT
GGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACATTTGCTGG
GTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCCCGTGAGGT
GAGTGGTACAAATCCCACCATGAAGAAATGAAGACGTGGGAATGGGATCA
GATTAACAGCCAGCTTCCTGA
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