CF835821

Overview
NameCF835821
Unique NameCF835821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 54/168 (32.14%), Postives = 94/168 (55.95%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+P+PR+HF +  +  + S     +  L+VPE+T   ++  N M   DPR G+Y+    ++RG +  K+V+  +  ++ + S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  133 NLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 300          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.431e-25
Identity = 55/176 (31.25%), Postives = 95/176 (53.98%), Query Frame = -3
Query:  266 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 754
            NL+PFPR+H+ ++ + P+ S     + S    ELT Q ++  N M   DPR+G+Y+  + ++RG +  ++    +  ++ K+S   VEW P   K  +    P  +  AS             + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L
Sbjct:  259 NLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASL 434          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 53/168 (31.55%), Postives = 91/168 (54.17%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+P+PR+HF +V + P+ S     + + +V E+T   ++  N M   DPRHG+Y+    ++RG +   +    +  ++ K +  FV+W P   K  +C   P          +  A   + N+T+I E +  +S +F  M  ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  258 NLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 54/168 (32.14%), Postives = 92/168 (54.76%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+PFPR+HF +V + P+ S     +  L+V E+T   ++  N M   DP+ G+Y+    ++RG +  K+V+  +  ++   S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY  EGM+E EF EA  ++
Sbjct:  255 NLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDL 422          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.440e-25
Identity = 55/168 (32.74%), Postives = 94/168 (55.95%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+P+PR+HF M  F P+ S     +   +V ++T   +++ N +   DPR G+Y+    ++RG +  KEV+  +   ++++S  FV+W P   K  + + PP    G  +A        + N+T+I E + R+  +F  M+ ++AFLHWY  EGM+E EF EA  ++
Sbjct:  265 NLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDL 432          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.162e-25
Identity = 55/168 (32.74%), Postives = 94/168 (55.95%), Query Frame = -3
Query:  299 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS--YFVEWIPNNVKSSVCDIPP------RGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 763
            +  NL+PFPRLHF +  + P+ S+   ++ ++TV  +T  ++   N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G  MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  164 IQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.436e-25
Identity = 57/172 (33.14%), Postives = 96/172 (55.81%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD-----IP-------PRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+PFPR+HF +  + PL S   +Q+   +V E+T   +++ N M   D + G+Y+    ++RG +  K+    + +++ K +  FV+W P   K  VC+     +P       PR L M S    N+T+I   + R+  +F  M+R++AF+HWY GE M+E EF+EA  ++
Sbjct:  256 NLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLS----NTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDL 423          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.273e-25
Identity = 54/168 (32.14%), Postives = 95/168 (56.55%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAS-----TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+PFPR+H+ ++ + P+ S     + S  V +LT Q  +  N M   DPR+G+Y+  + ++RG    ++  + + +++ K S   VEW P   K  +    P    G ++A      + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  260 NLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 427          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.850e-24
Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIP--------PRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+P+P      V   P T      +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   P        P  +  A   I NST+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+E   ++
Sbjct:  258 NLVPYPS-----VIIRPSTPAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEVREDL 420          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23
Identity = 53/168 (31.55%), Postives = 91/168 (54.17%), Query Frame = -3
Query:  275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754
            NL+P+PR+HF +    P+ S        L+V ++T   ++  N +   DPR G+Y+    ++RG +  K+V+E +  ++++ S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ +KAFLHWY  EGM+  EF EA  ++
Sbjct:  265 NLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDL 432          
The following BLAST results are available for this feature:
BLAST of CF835821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBA3_CHICK6.422e-2632.14Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA1_NEUCR1.431e-2531.25Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA_GIBZE1.868e-2531.55Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA2_CHICK1.868e-2532.14Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBAL3_HUMAN2.440e-2532.74Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA_DICPU4.162e-2532.74Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBAB_SCHCO5.436e-2533.14Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA2_EMENI9.273e-2532.14Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA1_STYLE7.850e-2433.33Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBAL3_MOUSE1.339e-2331.55Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835821 ID=CF835821; Name=CF835821; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTGATCAAACTAACAATTCTTTATTCAAATGCTCGAA
AAGAACAACAGACAATATCGTCTTAAAAGACAGAAATTGTAAACAACAAC
AAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTTTTTCT
GTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGAAGCTCTCCTCA
AGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGATATTG
TTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGTGAACT
CCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCTTACGC
CGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCTTGGAT
GGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACGTGGTG
GAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCACAAAG
TAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACCTCTTT
GGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTAGCGCCCAT
GGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACATTTGCTGG
GTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCCCGTGAGGT
GAGTGGTACAAATCCCACCATGAAGAAATGAAGACGTGGGAATGGGATCA
GATTAACAGCCAGCTTCCTGA
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