CF835821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26 Identity = 54/168 (32.14%), Postives = 94/168 (55.95%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+P+PR+HF + + + S + L+VPE+T ++ N M DPR G+Y+ ++RG + K+V+ + ++ + S FV+W P K + PP ++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 133 NLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 300
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 1.431e-25 Identity = 55/176 (31.25%), Postives = 95/176 (53.98%), Query Frame = -3 Query: 266 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 754 NL+PFPR+H+ ++ + P+ S + S ELT Q ++ N M DPR+G+Y+ + ++RG + ++ + ++ K+S VEW P K + P + AS + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L Sbjct: 259 NLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASL 434
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25 Identity = 53/168 (31.55%), Postives = 91/168 (54.17%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+P+PR+HF +V + P+ S + + +V E+T ++ N M DPRHG+Y+ ++RG + + + ++ K + FV+W P K +C P + A + N+T+I E + +S +F M ++AF+HWY GEGM+E EF+EA ++ Sbjct: 258 NLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDL 425
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25 Identity = 54/168 (32.14%), Postives = 92/168 (54.76%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+PFPR+HF +V + P+ S + L+V E+T ++ N M DP+ G+Y+ ++RG + K+V+ + ++ S FV+W P K + PP ++ A + N+T+I E + R+ +F M+ ++AF+HWY EGM+E EF EA ++ Sbjct: 255 NLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDL 422
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.440e-25 Identity = 55/168 (32.74%), Postives = 94/168 (55.95%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+P+PR+HF M F P+ S + +V ++T +++ N + DPR G+Y+ ++RG + KEV+ + ++++S FV+W P K + + PP G +A + N+T+I E + R+ +F M+ ++AFLHWY EGM+E EF EA ++ Sbjct: 265 NLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDL 432
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.162e-25 Identity = 55/168 (32.74%), Postives = 94/168 (55.95%), Query Frame = -3 Query: 299 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS--YFVEWIPNNVKSSVCDIPP------RGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 763 + NL+PFPRLHF + + P+ S+ ++ ++TV +T ++ N+M P G+Y+ M+RG + KE + + N++N+ S FV+W P K + + P G MA T + N+T+I ++F R++ +F M+ ++AF+HWY GEGM+E E Sbjct: 164 IQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.436e-25 Identity = 57/172 (33.14%), Postives = 96/172 (55.81%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD-----IP-------PRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+PFPR+HF + + PL S +Q+ +V E+T +++ N M D + G+Y+ ++RG + K+ + +++ K + FV+W P K VC+ +P PR L M S N+T+I + R+ +F M+R++AF+HWY GE M+E EF+EA ++ Sbjct: 256 NLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLS----NTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDL 423
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 9.273e-25 Identity = 54/168 (32.14%), Postives = 95/168 (56.55%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAS-----TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+PFPR+H+ ++ + P+ S + S V +LT Q + N M DPR+G+Y+ + ++RG ++ + + +++ K S VEW P K + P G ++A + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 260 NLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 427
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 7.850e-24 Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIP--------PRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+P+P V P T + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + P P + A I NST+I E+F R+ +F M+ ++AF+HWY GEGM+E EF+E ++ Sbjct: 258 NLVPYPS-----VIIRPSTPAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEVREDL 420
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23 Identity = 53/168 (31.55%), Postives = 91/168 (54.17%), Query Frame = -3 Query: 275 NLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 754 NL+P+PR+HF + P+ S L+V ++T ++ N + DPR G+Y+ ++RG + K+V+E + ++++ S FV+W P K + PP ++ A + N+T+I E + R+ +F M+ +KAFLHWY EGM+ EF EA ++ Sbjct: 265 NLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDL 432 The following BLAST results are available for this feature:
BLAST of CF835821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 407
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835821 ID=CF835821; Name=CF835821; organism=Citrus sinensis; type=EST; length=771bpback to top |