CF835821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11 Identity = 37/169 (21.89%), Postives = 86/169 (50.89%), Query Frame = -3 Query: 278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763 + +LIP PR HF + P TS+ + ++ TV ++ +++ KN M + +P + +++ + +G+ +V + ++ ++ + + F+ W P +++ ++ P +++ + N TSI +F+R +Q+ + +R AFL Y E + E E +++ Sbjct: 256 IIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNPGKQSCFISILNIIQGEADPNDVHKSLLRIRERKLATFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLDQYRKESIFENSLDEFDNS 424
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11 Identity = 38/168 (22.62%), Postives = 86/168 (51.19%), Query Frame = -3 Query: 278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763 L +L+P PR HF M G+ PL+ Q+Y S+ T ++ +++ KN+M + G Y++ + +G + +V + + ++ + + F+ W P +++ ++ P G K++ + N T I+ +F+ + +Q+ +R A+++ + + E E +S+ Sbjct: 253 LIASLVPTPRCHFLMTGYTPLSL--DQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 418
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11 Identity = 38/168 (22.62%), Postives = 87/168 (51.79%), Query Frame = -3 Query: 278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763 L +L+P PR HF M G+ PL+ Q++ S+ TV ++ +++ KN+M + G Y++ + +G + +V + + ++ + + F+ W P +++ ++ P G K++ + N T I+ +F+ + +Q+ +R A+++ + + E E +S+ Sbjct: 253 LIASLVPTPRCHFLMTGYTPLSL--DQKFTSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 418
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11 Identity = 45/180 (25.00%), Postives = 88/180 (48.89%), Query Frame = -3 Query: 263 LAVNLIPFPRLHFFMVGFVPLT-SRGSQQYISLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLV 763 L +LIP PR HF M G+ PLT R TV ++ +++ KN+M ++ R +Y++ + +G++ +V E + ++ + F++W P +++ ++ P +++ + N TSI+ +F + Q+ + +++AFL Y M D EF E+ + LV Sbjct: 208 LLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGLMLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLV 387
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11 Identity = 45/180 (25.00%), Postives = 88/180 (48.89%), Query Frame = -3 Query: 263 LAVNLIPFPRLHFFMVGFVPLT-SRGSQQYISLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLV 763 L +LIP PR HF M G+ PLT R TV ++ +++ KN+M ++ R +Y++ + +G++ +V E + ++ + F++W P +++ ++ P +++ + N TSI+ +F + Q+ + +++AFL Y M D EF E+ + LV Sbjct: 256 LLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGLMLANHTSIRHLFGKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLV 435
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11 Identity = 38/168 (22.62%), Postives = 87/168 (51.79%), Query Frame = -3 Query: 278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763 L +L+P PR HF M G+ PL+ Q++ S+ TV ++ +++ KN+M + G Y++ + +G + +V + + ++ + + F+ W P +++ ++ P G K++ + N T I+ +F+ + +Q+ +R A+++ + + E E +S+ Sbjct: 253 LIASLVPTPRCHFLMTGYTPLSL--DQKFNSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 418
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11 Identity = 39/168 (23.21%), Postives = 86/168 (51.19%), Query Frame = -3 Query: 278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763 L +L+P PR HF M G+ PL S Q+ S+ TV ++ +++ KN+M + G Y++ + +G + +V + + ++ + + F+ W P +++ ++ P G K++ + N T I+ +F+ + +Q+ +R A+++ + + E E +S+ Sbjct: 253 LIASLVPTPRCHFLMTGYTPL-SLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGLMLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 419 The following BLAST results are available for this feature:
BLAST of CF835821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 407
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835821 ID=CF835821; Name=CF835821; organism=Citrus sinensis; type=EST; length=771bpback to top |