CF835821

Overview
NameCF835821
Unique NameCF835821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 37/169 (21.89%), Postives = 86/169 (50.89%), Query Frame = -3
Query:  278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763
            +  +LIP PR HF    + P TS+  +   ++   TV ++ +++   KN M + +P +   +++   + +G+    +V + ++ ++ +  + F+ W P +++ ++    P      +++   + N TSI  +F+R  +Q+  + +R AFL  Y  E + E    E +++
Sbjct:  256 IIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNPGKQSCFISILNIIQGEADPNDVHKSLLRIRERKLATFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLDQYRKESIFENSLDEFDNS 424          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 38/168 (22.62%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763
            L  +L+P PR HF M G+ PL+    Q+Y S+   T  ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G K++   + N T I+ +F+ + +Q+    +R A+++ +    + E    E +S+
Sbjct:  253 LIASLVPTPRCHFLMTGYTPLSL--DQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 418          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 38/168 (22.62%), Postives = 87/168 (51.79%), Query Frame = -3
Query:  278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763
            L  +L+P PR HF M G+ PL+    Q++ S+   TV ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G K++   + N T I+ +F+ + +Q+    +R A+++ +    + E    E +S+
Sbjct:  253 LIASLVPTPRCHFLMTGYTPLSL--DQKFTSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 418          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 45/180 (25.00%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  263 LAVNLIPFPRLHFFMVGFVPLT-SRGSQQYISLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLV 763
            L  +LIP PR HF M G+ PLT  R        TV ++ +++   KN+M ++  R       +Y++   + +G++   +V E +  ++ +    F++W P +++ ++    P      +++   + N TSI+ +F +   Q+  + +++AFL  Y    M    D  EF E+   +  LV
Sbjct:  208 LLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGLMLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLV 387          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 45/180 (25.00%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  263 LAVNLIPFPRLHFFMVGFVPLT-SRGSQQYISLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLV 763
            L  +LIP PR HF M G+ PLT  R        TV ++ +++   KN+M ++  R       +Y++   + +G++   +V E +  ++ +    F++W P +++ ++    P      +++   + N TSI+ +F +   Q+  + +++AFL  Y    M    D  EF E+   +  LV
Sbjct:  256 LLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGLMLANHTSIRHLFGKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLV 435          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 38/168 (22.62%), Postives = 87/168 (51.79%), Query Frame = -3
Query:  278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763
            L  +L+P PR HF M G+ PL+    Q++ S+   TV ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G K++   + N T I+ +F+ + +Q+    +R A+++ +    + E    E +S+
Sbjct:  253 LIASLVPTPRCHFLMTGYTPLSL--DQKFNSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 418          
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 39/168 (23.21%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  278 LAVNLIPFPRLHFFMVGFVPLTSRGSQQYISL---TVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 763
            L  +L+P PR HF M G+ PL S   Q+  S+   TV ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G K++   + N T I+ +F+ + +Q+    +R A+++ +    + E    E +S+
Sbjct:  253 LIASLVPTPRCHFLMTGYTPL-SLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGLMLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 419          
The following BLAST results are available for this feature:
BLAST of CF835821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBG_SCHJP5.835e-1121.89Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG_EUPAE5.835e-1122.62Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_EUPOC5.835e-1122.62Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG3_MAIZE7.621e-1125.00Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG2_MAIZE9.953e-1125.00Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG1_EUPOC9.953e-1122.62Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG1_EUPCR9.953e-1123.21Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835821 ID=CF835821; Name=CF835821; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTGATCAAACTAACAATTCTTTATTCAAATGCTCGAA
AAGAACAACAGACAATATCGTCTTAAAAGACAGAAATTGTAAACAACAAC
AAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTTTTTCT
GTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGAAGCTCTCCTCA
AGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGATATTG
TTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGTGAACT
CCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCTTACGC
CGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCTTGGAT
GGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACGTGGTG
GAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCACAAAG
TAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACCTCTTT
GGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTAGCGCCCAT
GGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACATTTGCTGG
GTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCCCGTGAGGT
GAGTGGTACAAATCCCACCATGAAGAAATGAAGACGTGGGAATGGGATCA
GATTAACAGCCAGCTTCCTGA
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