CF835821

Overview
NameCF835821
Unique NameCF835821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.166e-90
Identity = 160/169 (94.67%), Postives = 165/169 (97.63%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKSSVCDIPPRGL M+STFIGNSTSIQEMFRRVSEQFTAMFR KAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRTLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRPKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 2.830e-90
Identity = 159/169 (94.08%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +L+VPELTQQMWDAKNMMCAADPRHGRYLTASA+FRGK+STKEVDEQM+N+QNKNSSYFVEWIPNNVKSSVCDI P+GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 6.303e-90
Identity = 158/169 (93.49%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFM+GF PLTSRGSQQY +L+VPE+TQQMWD+KNMMCAADPRHGRYLTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  249 RKLAVNLIPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKNMMCAADPRHGRYLTASAIFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 417
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.233e-90
Identity = 159/169 (94.08%), Postives = 165/169 (97.63%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PL SRGSQQY +L+VPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKS+VCDIPP GL+MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLASRGSQQYRALSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLRMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.128e-89
Identity = 156/169 (92.31%), Postives = 167/169 (98.82%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQM+DAKNMMCA+DPRHGRYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLK+ASTFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.128e-89
Identity = 155/169 (91.72%), Postives = 168/169 (99.41%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFM+GFVPLTSRGSQQY +LTVPELTQQM+DAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+K+SVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMIGFVPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 4.086e-89
Identity = 155/169 (91.72%), Postives = 167/169 (98.82%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFM+GF PLTSRGSQQY +LTVPELTQQM+DAKNMMCA+DPRHGRYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKM+STFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 327.405 bits (838), Expect = 5.336e-89
Identity = 159/169 (94.08%), Postives = 164/169 (97.04%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAV LIPFPRLHFFMVGF PLTSRGSQQY SL+VPELTQQMWD+KNMMCAADPRHGRYLTASAMFR KMSTK++DEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  119 RKLAVILIPFPRLHFFMVGFAPLTSRGSQQYRSLSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFREKMSTKDLDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 287
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 9.102e-89
Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTS  SQQY +LT+PELTQQMWDA+NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSSSSQQYRALTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFMGNSTSIQEMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.553e-88
Identity = 153/169 (90.53%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFM+GF PLTSRGSQQY +LTVPELTQQM+DAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSS+CDIPP+GLKMA TF+GNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CF835821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBB2_DAUCA2.166e-9094.67Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB4_ARATH2.830e-9094.08Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_PEA6.303e-9093.49Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB2_SOYBN8.233e-9094.08Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB_EUPCR3.128e-8992.31Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB1_CYAPA3.128e-8991.72Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB_EUPFO4.086e-8991.72Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB1_DAUCA5.336e-8994.08Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]
TBB7_GOSHI9.102e-8992.90Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_TETTH1.553e-8890.53Tubulin beta chain OS=Tetrahymena thermophila GN=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835821 ID=CF835821; Name=CF835821; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTGATCAAACTAACAATTCTTTATTCAAATGCTCGAA
AAGAACAACAGACAATATCGTCTTAAAAGACAGAAATTGTAAACAACAAC
AAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTTTTTCT
GTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGAAGCTCTCCTCA
AGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGATATTG
TTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGTGAACT
CCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCTTACGC
CGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCTTGGAT
GGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACGTGGTG
GAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCACAAAG
TAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACCTCTTT
GGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTAGCGCCCAT
GGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACATTTGCTGG
GTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCCCGTGAGGT
GAGTGGTACAAATCCCACCATGAAGAAATGAAGACGTGGGAATGGGATCA
GATTAACAGCCAGCTTCCTGA
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