CF835823

Overview
NameCF835823
Unique NameCF835823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_DROER (Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B_ANOGA (Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 73/89 (82.02%), Postives = 84/89 (94.38%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 493
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
The following BLAST results are available for this feature:
BLAST of CF835823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_DROTE2.683e-3683.33Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]
H2B_DROSI2.683e-3683.33Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE2.683e-3683.33Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR2.683e-3683.33Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME2.683e-3683.33Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA2.683e-3683.33Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY2.683e-3683.33Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]
H2B_DROER2.683e-3683.33Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=... [more]
H2B_ANOGA2.683e-3683.33Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=... [more]
H2B1C_HUMAN2.683e-3682.02Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835823 ID=CF835823; Name=CF835823; organism=Citrus sinensis; type=EST; length=716bp
CTCCCGTATTCACCGAATCTAACAATTTGTCTTCTACTTTCAATTCCTCG
CGAACCCACAGTTTCTTCTGACGATGGCACCAAAGGCGGAGAAGAAGCCA
GCGGAGGAGAAGAAGACACCGGTAGCGGAGAAGGCGCCTGCCGAGAAGAA
GCCGAAGGCCGGGAAGAAACTTCCGAAGGAAGCCGCAGCGGGTGACAAGA
AGAAGAAGCGCACGAAGAAGAGCATTGAGACGTACAAGATCTACATATTC
AAAGTCCTGAAGCAAGTCCATCCAGATATCGGAATCTCGAGCAAGGCTAT
GGGAATTATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAGG
AATCTTCCAGGCTGGCAAGGTACAACAAGAAGCCGACGATAACTTCTCGT
GAAATCCAGACCGCTGTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCA
CGCCGTTTCTGAGGGTACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAA
TTAGGGTTAGGTTTCACTATGTGCGATGAAATTGGGGTTAGTGATGTTTG
CTGTGTCCTTTCTTGGAGTAATAATGTAAGTAGTTAGTATTAATGAAATG
GCATGGTGCTGATAGAAGTGACTTATATTGCCTTATTATGTTCGATCAAT
GTGTTGATATCGGATTTTAGCAACTGGTTTTATAAGATATGGTCTTAAAT
AAAAAAAAAAAAAAAA
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