CF835823

Overview
NameCF835823
Unique NameCF835823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B8_CHICK (Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B5_CHICK (Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF835823 vs. ExPASy Swiss-Prot
Match: H2B2E_PONAB (Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  227 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 496
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF835823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3B_MOUSE5.406e-3782.22Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN5.406e-3782.22Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]
H2B3A_MOUSE5.406e-3782.22Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B1P_MOUSE5.406e-3782.22Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1L_HUMAN5.406e-3782.22Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
H2B1F_MOUSE5.406e-3782.22Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]
H2B1B_MOUSE5.406e-3782.22Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B8_CHICK7.061e-3783.33Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV... [more]
H2B5_CHICK7.061e-3783.33Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2[more]
H2B2E_PONAB7.061e-3783.33Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835823 ID=CF835823; Name=CF835823; organism=Citrus sinensis; type=EST; length=716bp
CTCCCGTATTCACCGAATCTAACAATTTGTCTTCTACTTTCAATTCCTCG
CGAACCCACAGTTTCTTCTGACGATGGCACCAAAGGCGGAGAAGAAGCCA
GCGGAGGAGAAGAAGACACCGGTAGCGGAGAAGGCGCCTGCCGAGAAGAA
GCCGAAGGCCGGGAAGAAACTTCCGAAGGAAGCCGCAGCGGGTGACAAGA
AGAAGAAGCGCACGAAGAAGAGCATTGAGACGTACAAGATCTACATATTC
AAAGTCCTGAAGCAAGTCCATCCAGATATCGGAATCTCGAGCAAGGCTAT
GGGAATTATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAGG
AATCTTCCAGGCTGGCAAGGTACAACAAGAAGCCGACGATAACTTCTCGT
GAAATCCAGACCGCTGTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCA
CGCCGTTTCTGAGGGTACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAA
TTAGGGTTAGGTTTCACTATGTGCGATGAAATTGGGGTTAGTGATGTTTG
CTGTGTCCTTTCTTGGAGTAATAATGTAAGTAGTTAGTATTAATGAAATG
GCATGGTGCTGATAGAAGTGACTTATATTGCCTTATTATGTTCGATCAAT
GTGTTGATATCGGATTTTAGCAACTGGTTTTATAAGATATGGTCTTAAAT
AAAAAAAAAAAAAAAA
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