CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835836_ssr79 microsatellite CF835836_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:787..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 49/139 (35.25%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  290 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIW---GKYL-DHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVS 694
            G+  E +YPY  A    C      +A  +++   ++ +E ++AA L  +  ++VG+ A+ +Q Y  G+S P+ W    KYL DH  L VGYG S       K +PFWI+KN WG  WGENGY+++  G    G++++ +
Sbjct:  184 GLMLEDNYPYD-AKNEKCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGISHPW-WIFCSKYLLDHAVLLVGYGVSE------KNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVAT 314          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = -1
Query:  323 EKDYPYPGADGGS--CKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV--SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG 682
            E  YPY   +G    C+ +  +I AA+++   +  +ED +AA L ++GPLA+ + A     Y GG+  SC     K LDHG L VGY  +          P+WIIKN W   WGE+GY +I  G
Sbjct:  211 EASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDAESFMDYNGGILTSCT---SKQLDHGVLLVGYNDNS-------NPPYWIIKNSWSNMWGEDGYIRIEKG 324          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = -1
Query:  260 EKDYPYPGADGGSCK---FDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV-SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR-----KVWGVDSMVSFVGAIHTPSS 682
            E  YPY    GG  +    D+ ++ A ++ F  +  +E+++A  + K GP+AV + A   Q Y GGV S    W   L+HG L VG+  +          P+WI+KN WG +WGE GY ++ MG      K + V + V      H P++
Sbjct:  214 EASYPY--TSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVDATTWQLYFGGVVSLCLAWS--LNHGVLIVGFNKNA-------KPPYWIVKNSWGSSWGEKGYIRLAMGSNQCMLKNYPVSATVESPHTPHVPTT 352          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = -1
Query:  260 EKDYPYPGADGGSCK---FDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV-SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR-----KVWGVDSMVSFVGAIHTPSS 682
            E  YPY    GG  +    D+ ++ A ++ F  +  +E+++A  + K GP+AV + A   Q Y GGV S    W   L+HG L VG+  +          P+WI+KN WG +WGE GY ++ MG      K + V + V      H P++
Sbjct:  214 EASYPY--TSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVDATTWQLYFGGVVSLCLAWS--LNHGVLIVGFNKNA-------KPPYWIVKNSWGSSWGEKGYIRLAMGSNQCMLKNYPVSATVESPHTPHVPTT 352          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = -1
Query:  323 EKDYPYPGADGGSCKFDKSK---IAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG 682
            E  YPY   +G   +   S    + A +    +I   E  MAA L K+GP+A+ + A    +Y  GV    I GK L+HG L VGY  +G  P       +W+IKN WG +WGE GY ++ MG
Sbjct:  211 EDSYPYVSGNGYVPECSNSSELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACI-GKQLNHGVLLVGYDMTGEVP-------YWVIKNSWGGDWGEQGYVRVVMG 325          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGV---SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ +KDYPY G DG   +  K+     + ++  +    ++     V H P+++ I+A     Q Y  G+   SC    G  LDHG + VGYG+         GK +WI++N WG++WGE+GY ++
Sbjct:  217 GIDTDKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIFDGSC----GTQLDHGVVAVGYGTEN-------GKDYWIVRNSWGKSWGESGYLRM 331          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = -1
Query:  323 EKDYPYPGADGGSCKFDKSK----IAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG 682
            E  YPY   +G   +   S     + A +    +I   E  MAA L K+GP+A+ + A    +Y  GV    I GK L+HG L VGY  +G  P       +W+IKN WG +WGE GY ++ MG
Sbjct:  211 EDSYPYVSGNGYVPECSNSSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACI-GKQLNHGVLLVGYDMTGEVP-------YWVIKNSWGGDWGEQGYVRVVMG 326          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 47/125 (37.60%), Postives = 61/125 (48.80%), Query Frame = -1
Query:  323 VEREKDYPYPGADGGS--CKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG 691
            V  E  YPY   +G S  C      + A ++    +  +E Q+AA L  +GP+AV + A    TY GGV    +  + LDHG L VGY  S   P       +WIIKN W   WGE GY +I  G
Sbjct:  205 VYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYNDSAAVP-------YWIIKNSWTTQWGEEGYIRIAKG 321          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = -1
Query:  305 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGV 694
            GV+ E DYPY G+DG +C+ D +K    V   +R I+  E+++   L   GP+ V I A  +  Y  G+   Y      +H  L VGYG            P+WI+KN WGE+WGE GY+++       G+
Sbjct:  192 GVQAENDYPYEGSDG-NCRVDVAKFVVKVKKCYRYIAVFEEKLKDLLRIVGPIPVAIDASDIVNYRRGIM-RYCSNYGFNHAVLLVGYGVEN-------NVPYWILKNTWGEDWGEQGYFRVQQNINACGI 313          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 41/135 (30.37%), Postives = 68/135 (50.37%), Query Frame = -1
Query:  284 EKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF--EEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFV 682
            +  YP+   +G    F +S+   +V +F   +F  +ED+MA  L+  GPL V + A+  Q Y+GG+   +      +H  L  G+  +G         P+W+++N WG +WG  GY  + MG  V G+   V+ V
Sbjct:  183 DSQYPFKAVNGQCRHFPQSQAGVSVKDFSAYNFRGQEDEMARALLSFGPLVVIVDAMSWQDYLGGIIQHHCSSGEANHAVLITGFDRTG-------NTPYWMVRNSWGSSWGVEGYAHVKMGGNVCGIADSVAAV 310          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CATL_SCHMA5.027e-1635.25Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CYSP_TRYBB2.495e-1537.90Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
LMCPA_LEIME7.259e-1532.67Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI7.259e-1532.67Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
LMCPB_LEIME9.481e-1537.40Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
RD21A_ARATH1.238e-1432.54Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSP2_LEIPI1.238e-1437.10Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CYSP_TRYCR1.617e-1437.60Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CATV_NPVHC2.112e-1435.11Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATO_MOUSE2.112e-1430.37Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
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