CF835837

Overview
NameCF835837
Unique NameCF835837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.626e-29
Identity = 86/262 (32.82%), Postives = 133/262 (50.76%), Query Frame = 3
Query:   15 LFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRL-RLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDG---GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPL--AVGINAVWMQTYIGGVSCPYICGKYLDH 773
            +F  +  K  K Y +  E + R  +F+ NLR    R   + +   G+ +F+DL+  E+     G + R  R       +    T+D   LP   DWR+ GAVT VKDQG C SCW+FS  GA+EG + + TGELV+LSEQ L++C+ E         ++GC GG + +A+E+I+  GG+  + DYPY   +G   G  K D   +   +  +  + ++++      V H P+   V  ++   Q Y  GV     CG  L+H
Sbjct:   55 MFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDVLPKSVDWRNEGAVTEVKDQGLCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE---------NNGCGGGKVETAYEFIMNNGGLGTDNDYPYKALNGVCEGRLKEDNKNV--MIDGYENLPANDEAALMKAVAHQPVTAVVDSSSREFQLYESGV-FDGTCGTNLNH 304          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.626e-29
Identity = 92/259 (35.52%), Postives = 133/259 (51.35%), Query Frame = 3
Query:   12 HLFSLFKSKFSKTYATQEEHDYRFRVFKANLR--RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ-KAPILPTNDLPTDFDWRDHGAVT--GVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDH 773
            +L++ +K K+++ Y +Q +  YRF+VF  NL   RA +      T    + +F+D++  EF   +L L    R+P  A+  A          + DW D+  V    VK+QG+CGSCW+FSA GALE    +   +   LSEQ LVDC    D E       GCNGG M+SAFEY+    G+   KDYPYT  D G+CK    +    V  F+ I S ++   A  ++   ++V ++A   Q Y  GV     C K L+H
Sbjct:   24 NLYANWKMKYNRRYTSQRDEMYRFKVFSDNLNYIRAFQDSTESATYTLELNQFADMSQQEFASTYLSL----RVPKTAKLNASNANFQYKGAEVDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNKKYELSEQDLVDCSGPYDNE-------GCNGGWMDSAFEYVAD-NGLAEAKDYPYTAKD-GTCKTSVKRPYTHVQGFTDIDSCDE--LAQAIQERTVSVAVDANPWQFYRSGVLSK--CTKNLNH 265          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.774e-29
Identity = 85/255 (33.33%), Postives = 128/255 (50.20%), Query Frame = 3
Query:   27 FKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT----KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN---DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY 764
            +K+K++K+Y+ +EE   R  V++ N+R  K     +    +  T    KF D T  EFR+        + +PA A   P    +    LP   DWR+ G VT V++QG CGSCW+F+A GA+EG  F  TG L  LS Q L+DC            + GC  G  + AFEY+LK  G+E E  YPY G D G C++     +A ++++  +  +E  +   +   GP++  I+A     + Y GG+     C  Y
Sbjct:   32 WKTKYAKSYSPKEEA-LRRAVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSI----DNIPIPA-AMTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVG-------NKGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKD-GPCRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSY 272          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 76/171 (44.44%), Postives = 96/171 (56.14%), Query Frame = 3
Query:  270 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSC-PYICGKYLDH 773
            +P   DW   G VT VK+QG CGSCW+FSATGALEG  F  TG+LVSLSEQ LVD             + GCNGGLM++AF+YI + GG++ E+ YPY  TD  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+   P    K LDH
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRP-------QGNQGCNGGLMDNAFQYIKENGGLDSEESYPYEATD-TSCNYKPEYSAAKDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDH 163          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  264 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV 737
            +DLP   DWR++GAV  VK+QG CGSCW+FS   A+EG + + TG+L+SLSEQQLVDC          + + GC GG MN AF++I+  GG+  E+ YPY G D G C    +    ++ ++  + S  +Q     V + P++V ++A     Q Y  G+
Sbjct:    1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT---------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD-GICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGI 150          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 84/262 (32.06%), Postives = 133/262 (50.76%), Query Frame = 3
Query:    9 EHLFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLD-PTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND-LPTDFDWRD-HGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTG-TDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV--SCPYICG-KYLDH 773
            + +F LF+ +F+++Y    E+  R  +F  NL +A+R Q  D  TA  G T FSDLT  EF + +       R P   +K       + +P   DWR     ++ VK+QG+C  CW+ +A   ++    +   + V +S Q+L+DC+          C +GCNGG +  A+  +L   G+  EKDYP+ G      C   K K  A + +F+++S++E  +A  L  HGP+ V IN   +Q Y  GV  + P  C  + +DH
Sbjct:   37 KEVFKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCER---------CGNGCNGGFVWDAYLTVLNNSGLASEKDYPFQGDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINMKLLQHYQKGVIKATPSSCDPRQVDH 289          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 84/265 (31.70%), Postives = 130/265 (49.06%), Query Frame = 3
Query:   27 FKSKFSKTYATQEEHDYRFRVFKANLRRA----KRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-----NRRLRLPADAQKAPILPTN-----DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAV--WMQTYIGGVSCPYICGKYLDH 773
            +K K+ K Y+ +EE   R  V++ N+++     +   L   T    +  F+D+T  EF+   +G      N   RL   A  +   P +      LP   DWR+ G VT V+ QG C SCW+F  TGA+EG  F  TG+L+ LS Q L+DC            + GC  G   +AF+Y+L  GG+E E  YPY   + G C+++    +A ++ F V+   ED +   +   GP+A G++ +    + Y  GV     C  Y++H
Sbjct:   32 WKIKYEKLYSPEEEVLKRV-VWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKDMIIGFQLPVHNTEKRLWKRALGS-FFPNSWNWRDALPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDC-------SKPQGNRGCLWGNTYNAFQYVLHNGGLEAEATYPYERKE-GVCRYNPKNSSAKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSYVNH 286          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 90/259 (34.75%), Postives = 131/259 (50.58%), Query Frame = 3
Query:   12 HLFSLFKSKFSKTYATQEEHDYRFRVFKANLR--RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ-KAPILPTNDLPTDFDWRDHGAVT--GVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDH 773
            +L++ +K K+++ Y  Q +  YR++VF  NL   RA      + T    + +F+D++  EF + +L L    ++P  A+  A          + DW D+  V    VK+QG+CGSCW+FSA GALE    +       LSEQ LVDC    D       + GCNGG M+SAFEY+    G+   KDYPYT  D G+CK    +    V  F  I S ++   A  ++   +AV ++A   Q Y  GV     C K L+H
Sbjct:   24 NLYANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSL----KVPRTAKLNAANSNFQYKGAEVDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYD-------NDGCNGGWMDSAFEYVAD-NGLAEAKDYPYTAKD-GTCKTSVKRPYTHVQGFKDIDSCDE--LAQTIQERTVAVAVDANPWQFYRSGVLSK--CTKNLNH 265          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 85/258 (32.95%), Postives = 129/258 (50.00%), Query Frame = 3
Query:   27 FKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPA-----DAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYL 767
            +K+K++K+Y+  EE + +  V++ NL+  +     +    +G T     F+D T  EFR+    +     +PA      AQK   +    LP   DWR  G VT V++QG CGSCW+F+A GA+EG  F  TG L  LS Q L+DC            ++GC  G  + AF Y+LK  G+E E  YPY G D G C++     +A ++ F  +  +E  +   +   GP++  I+A     + Y GGV     C  Y+
Sbjct:   32 WKTKYAKSYSPVEE-ELKRAVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDI----LIPAAVTNPSAQKQVSI---GLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDC-------SKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKD-GPCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYV 273          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 3
Query:    9 EHLFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP----TAVHGVTKFSDLTPSEFRRQFLGLNRRLR------LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLV-KHGPLAVGIN 704
            + L+  +K  ++K Y   ++  +R  +++ N++  +   L       T   G+ +F+D+T  EF+ ++L    R        +P +A    +      P   DWR+ G VT VKDQG CGSCW+FS TG +EG +  +    +S SEQQLVDC            ++GC+GGLM +A++Y LK  G+E E  YPYT  + G C+++K    A V+ +  + S  +    NLV    P AV ++
Sbjct:   18 DDLWHQWKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAV------PDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWG-------NNGCSGGLMENAYQY-LKQFGLETESSYPYTAVE-GQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVD 244          
The following BLAST results are available for this feature:
BLAST of CF835837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CPR4_ARATH1.626e-2932.82Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CATL2_PARTE1.626e-2935.52Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATJ_MOUSE2.774e-2933.33Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATL1_SHEEP8.070e-2944.44Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CPGP2_ZINOF1.054e-2840.00Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATW_MOUSE1.054e-2832.06Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATQ_RAT1.798e-2831.70Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATL1_PARTE1.798e-2834.75Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATJ_RAT1.798e-2832.95Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATLL_FASHE4.005e-2832.51Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835837 ID=CF835837; Name=CF835837; organism=Citrus sinensis; type=EST; length=774bp
TGAACGCGGAGCACCTCTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACT
TACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAA
CCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACG
GTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTC
CTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAAGGCTCC
TATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACG
GCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCG
TTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGA
GCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTGTG
ATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAATG
AACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGAGAGAA
GGACTACCCTTACACTGGGACCGACGGTGGTTCCTGCAAATTTGACAAAA
GCAAAATTGCTGCAGCTGTATCTAATTTCAGTGTTATTTCCTCTGATGAA
GATCAAATGGCTGCAAATTTGGTGAAACATGGCCCTCTGGCAGTGGGTAT
CAATGCCGTTTGGATGCAAACATATATTGGAGGAGTTTCATGCCCATACA
TTTGCGGGAAGTATTTGGATCATG
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