CF835837

Overview
NameCF835837
Unique NameCF835837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:253..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.023e-15
Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  273 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG---ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGIN 704
            P   DWR  G VT ++DQ  CGSC++F +  ALEG   +  G     + LSE+ +     +C  +     ++GCNGGL ++ ++YI++  GV +E DYPYTG+D  +CK +            V  ++E ++ A L   G L V I+
Sbjct:   91 PESVDWRKEGKVTPLRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHM-----QCTRDNG---NNGCNGGLGSNVYDYIIE-HGVAKESDYPYTGSD-STCKTNVKSFRKITGYTKVPRNNEAELKAAL-SQGLLDVSID 226          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 57/198 (28.79%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   18 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFL-------GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCK 590
            F  +K  F+K+YAT E+ +   + F  +++  +            +   SDL+  EF+ +FL        L  +  L A+     I    + P + D R    VT ++ QG CGSCW+FS   A E A+     + + L+EQ+LVDC          +   GC+G  +    EYI +  GV +E  Y Y   +  SC+
Sbjct:   26 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNG-------GAINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSI--NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC----------ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE-QSCR 202          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 67/241 (27.80%), Postives = 114/241 (47.30%), Query Frame = 3
Query:   18 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRR-QLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV 737
            F  +  K +K Y T+ E  YR  ++ +N R  +   Q  D T   G  +F  L+  EF   +L  +    +       P +    L    DWR++   T VK+QG C S W+FS + +LE  + +   + ++ S QQ+VDCD+          ++GC+GG    A EY+L+ G V    +YPY   +  +CK  ++     ++ +S +   +  +   L  + P++VG+ A   Q Y  G+
Sbjct:   29 FERWALKNNKFY-TESEKLYRMEIYNSNKRMIEEHNQREDVTYQMGENQFMTLSHEEFVDLYLQKSDS-SVNIMGASLPEVQLEGLGA-VDWRNY---TTVKEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDCDYN---------NTGCSGGYNAYAMEYVLRVGLVS-STNYPYVAKN-QTCKQSRNG-TYFINGYSFVGGSQSNLQYYLNNY-PISVGVEASNWQFYRSGL 250          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: GMSA_DICDI (Gamete and mating-type specific protein A OS=Dictyostelium discoideum GN=gmsA PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 49/162 (30.25%), Postives = 70/162 (43.21%), Query Frame = 3
Query:  228 PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG----ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGI 701
            P     AP  P        DW  +   T ++DQG CGSCW+F+++ ALE  + +  G      + LS Q  V+C             SGCNGG   + F +  K  G+  EKD PY    G SC    S      +N+      +  + A L K GP+ + +
Sbjct:  226 PKPTTPAPTTPAPTSTLTVDWTSYQ--TPIRDQGQCGSCWAFASSAALESRYLIKYGTAQKSTLQLSNQNAVNC-----------IASGCNGGWSGNYFNF-FKTPGIAYEKDDPYKAVTGTSCITTSSVARFKYTNYGYTEKTKAALLAEL-KKGPVTIAV 372          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 58/191 (30.37%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  159 KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN--DLPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVS--LSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAV 695
            ++  LT  E  R+  G +RR+  P  A     +      LPT +DWR+ HG   VT V++QG+CGSC+SF++ G +E    + T    +  LS Q++V C              GC GG          +  G+  E  +PYTGTD   C+  +       S +  +       +E  M   LV  GP+AV
Sbjct:  192 EYETLTLKEMIRRGGGHSRRIPRPKPAPITAEIQKKILHLPTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTD-SPCRLKEGCFRYYSSEYHYVGGFYGGCNEALMKLELVHQGPMAV 372          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 57/191 (29.84%), Postives = 85/191 (44.50%), Query Frame = 3
Query:  159 KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN--DLPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEG--AHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAV 695
            ++  LT  +  R+  G +R++  P  A     +      LPT +DWR+ HG   V+ V++Q +CGSC+SF++ G LE       S  +   LS Q++V C              GC GG          +  G+  E  +PYTGTD   CK  +       S +  +       +E  M   LV HGP+AV
Sbjct:  192 EYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKVLHLPTSWDWRNIHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTSNSQTPILSPQEVVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTD-SPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAV 372          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 57/191 (29.84%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  159 KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN--DLPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEGAHFLST--GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAV 695
            ++  LT  +  R+  G +R++  P  A     +      LPT +DWR+ HG   V+ V++Q +CGSC+SF++ G LE    + T   +   LS Q++V C              GC GG          +  G+  E  +PYTGTD   CK  +       S +  +       +E  M   LV HGP+AV
Sbjct:  192 EYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTD-SPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAV 372          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 51/152 (33.55%), Postives = 71/152 (46.71%), Query Frame = 3
Query:  270 LPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEGAHFLST--GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAV 695
            LPT +DWR+ HG   V+ V++Q +CGSC+SF++ G LE    + T   +   LS Q++V C              GC GG          +  G+  E  +PYTGTD   CK  +       S +  +       +E  M   LV HGPLAV
Sbjct:  231 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASVGMLEARIRILTNNSQTPILSSQEVVSCSQYA---------QGCEGGFPYLTAGKYAQDFGLVEEACFPYTGTD-SPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVYHGPLAV 372          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 59/202 (29.21%), Postives = 89/202 (44.06%), Query Frame = 3
Query:  159 KFSDLTPSEFRRQFLGLNRRLRLPA-----DAQKAPILPTNDLPTDFDWRD-----HGAVTGVKDQGACGSCWSFSATGALEGAHFL--STGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL--KAG---GVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-----SSDEDQMAANLVKHGPLAVG 698
            + S  T  E R +  G+   +  P+        K  I  T +LP +FDW          VT +++QG CGSC++  +  ALE    L  +  E   LS Q +VDC              GCNGG     F +++  K G   G+ ++   PYTG D G C   K+      +++S I     +++E  M   L+ +GP  VG
Sbjct:  176 ELSKYTIDELRNRAGGVKSMVTRPSVLNRKTPSKELISLTGNLPLEFDWTSPPDGSRSPVTPIRNQGICGSCYASPSAAALEARIRLVSNFSEQPILSPQTVVDC---------SPYSEGCNGG-----FPFLIAGKYGEDFGLPQKIVIPYTGEDTGKCTVSKNCTRYYTTDYSYIGGYYGATNEKLMQLELISNGPFPVG 363          
The following BLAST results are available for this feature:
BLAST of CF835837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
ACP2_ENTHI1.023e-1534.69Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
PEPT1_DERPT1.131e-1428.79Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
CATL3_PARTE1.930e-1427.80Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
GMSA_DICDI9.578e-1430.25Gamete and mating-type specific protein A OS=Dicty... [more]
CATC_BOVIN6.864e-1230.37Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CATC_PONAB8.964e-1229.84Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CATC_HUMAN1.171e-1129.84Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
CATC_MACFA1.529e-1133.55Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
CATC_SCHMA5.811e-1129.21Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835837 ID=CF835837; Name=CF835837; organism=Citrus sinensis; type=EST; length=774bp
TGAACGCGGAGCACCTCTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACT
TACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAA
CCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACG
GTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTC
CTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAAGGCTCC
TATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACG
GCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCG
TTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGA
GCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTGTG
ATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAATG
AACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGAGAGAA
GGACTACCCTTACACTGGGACCGACGGTGGTTCCTGCAAATTTGACAAAA
GCAAAATTGCTGCAGCTGTATCTAATTTCAGTGTTATTTCCTCTGATGAA
GATCAAATGGCTGCAAATTTGGTGAAACATGGCCCTCTGGCAGTGGGTAT
CAATGCCGTTTGGATGCAAACATATATTGGAGGAGTTTCATGCCCATACA
TTTGCGGGAAGTATTTGGATCATG
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