CF835847

Overview
NameCF835847
Unique NameCF835847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: FYN_BOVIN (Proto-oncogene tyrosine-protein kinase Fyn OS=Bos taurus GN=FYN PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = -1
Query:  351 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRV-LAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFG--YHAPEYAMTGQLNAKSDVYSFGVVLLELLT-GRKP 857
            E FL +  ++ +LKH+  VQL  Y V     + +  E+ + GSL D L   +G         L     V +A   A G+ Y+      + IHRD++S+N+L+ +  + KIADF L+    D     ++ R    F   + APE A+ G+   KSDV+SFG++L EL+T GR P
Sbjct:  309 ESFLEEAQIMKKLKHDKLVQL--YAVVSEEPIYIVTEYMNKGSLLDFLKDGEG-------RALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGNGLICKIADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 466          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: DDR1_RAT (Epithelial discoidin domain-containing receptor 1 OS=Rattus norvegicus GN=Ddr1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 54/174 (31.03%), Postives = 86/174 (49.43%), Query Frame = -1
Query:  366 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL----------HGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS-NQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELL 854
            +FL +V ++SRLK  N ++LLG CV      +  ++  NG L+  L           G  G + +  GP +S+   + +    A G+ YL   A  + +HRD+ + N L+ ++   KIADF +S N       R+    VL    + A E  + G+    SDV++FGV L E+L
Sbjct:  665 DFLKEVKIMSRLKDLNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLENKVTQGLPGDRESDQGPTISYPMLLHVGAQIASGMRYL---ATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVL-PIRWMAWECILMGKFTTASDVWAFGVTLWEVL 834          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: PKSC_STRCO (Serine/threonine-protein kinase pksC OS=Streptomyces coelicolor GN=pksC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 54/180 (30.00%), Postives = 84/180 (46.67%), Query Frame = -1
Query:  333 EEFLAQVSMVSRLKHENFVQLLGYCVDG----TSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHST-RVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLP 857
            E F  +   V++L H N V +     D     T+  +  E+     L  +L      +GA P       + +KI       LE  HE     ++HRDIK  NV++    V K+ DF ++         +  T  V+GT  Y +PE A+   ++A+SD+YS G++L +L+TGR P D   P
Sbjct:   63 ERFRREAQAVAKLTHTNIVSVFDTGEDDLDGMTTPYIVMEYVEGRPLGSVLDEDVRQQGAMPA-----DKALKITADVLAALEISHEMG---LVHRDIKPGNVMMTKRGVVKVMDFGIARAMQSGVTSMTQTGMVVGTPQYLSPEQALGRGVDARSDLYSVGIMLFQLVTGRLPFDADSP 234          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: NTRK3_SAIBB (NT-3 growth factor receptor OS=Saimiri boliviensis boliviensis GN=NTRK3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 66/255 (25.88%), Postives = 108/255 (42.35%), Query Frame = -1
Query:  117 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL--HGRKGV-----KGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT-GRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQPLLNARP 857
            ++F  +  +++ L+HE+ V+  G C DG   ++ +E+  +G L+  L  HG   +     +  Q    L   Q + IA   A G+ YL   A  H +HRD+ + N  +  + + KI DF +S               +    +  PE  M  +   +SDV+SFGV+L E+ T G++P              W   +LS  +V +C+      + P             C Q E   R N+  + K L  L  A P
Sbjct:  583 KDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPXQAKGELGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCXVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQP--------------WF--QLSNTEVIECITQGRVLERPRVCPKEVYDVMLGCWQREPQQRLNIKEIYKILHALGKATP 818          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: LTK_HUMAN (Leukocyte tyrosine kinase receptor OS=Homo sapiens GN=LTK PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 68/246 (27.64%), Postives = 110/246 (44.72%), Query Frame = -1
Query:  138 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL-HGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIF---DDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGG---DYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQ 854
            +FL +  ++S+ +H+N V+ +G  +  T R++  E  S G +   L H R  +   QP P L  +  +++A   A+G  YL E    H IHRDI + N L+       VAKI DF ++      +      R L    +  PE  + G   +K+D +SFGV+L E+                SL     P  +  +V   +D  +GG   D P             C Q+E + RP+ + +++ LQ
Sbjct:  557 DFLMEALIISKFRHQNIVRCVGLSLRATPRLILLELMSGGDMKSFLRHSRPHL--GQPSP-LVMRDLLQLAQDIAQGCHYLEEN---HFIHRDIAARNCLLSCAGPSRVAKIGDFGMARDIYRASYYRRGDRALLPVKWMPPEAFLEGIFTSKTDSWSFGVLLWEIF---------------SLGYMPYPGRTNQEV---LDFVVGGGRMDPPRGCPGPVYRIMTQCWQHEPELRPSFASILERLQ 778          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: ROS_RAT (Proto-oncogene tyrosine-protein kinase ROS OS=Rattus norvegicus GN=Ros1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = -1
Query:  351 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDD-----VAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT-GRKP 854
            EFL +  ++S+  H N ++ LG C+    + +  E    G L   L   +G      GP+L+    V++ V  +KG  YL +    H IHRD+ + N L+   D     V KI DF L+ +             L    + APE  M G   ++SDV+SFG+++ E+LT G +P
Sbjct: 1985 EFLKEAHLMSKFNHPNILKQLGVCLLSEPQYIILELMEGGDLLSYLRKARGT--TLSGPLLTLADLVELCVDISKGCVYLEQM---HFIHRDLAARNCLVSVKDYTSPRVVKIGDFGLAREIYKHDYYRKRGEGLLPVRWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQP 2153          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: ROS_MOUSE (Proto-oncogene tyrosine-protein kinase ROS OS=Mus musculus GN=Ros1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 55/174 (31.61%), Postives = 84/174 (48.28%), Query Frame = -1
Query:  351 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDD-----VAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT-GRKP 854
            EFL +  ++S+  H N ++ LG C+ G  + +  E    G L   L   +G      GP L+    V++ V  +KG  YL +    H IHRD+ + N L+   D     V KI DF L+ +             L    + APE  M G   ++SDV+SFG+++ E+LT G +P
Sbjct: 1986 EFLKEAHLMSKFNHPNILKQLGVCLLGEPQYIILELMEGGDLLSYLRKARGT--TFHGPSLTLLDLVELCVDISKGCVYLEQM---HFIHRDLAARNCLVSVKDYTSPRVVKIGDFGLAREIYKNDYYRKRGEGLLPVRWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQP 2154          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: RAF1_XENLA (RAF proto-oncogene serine/threonine-protein kinase OS=Xenopus laevis GN=raf1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 55/185 (29.73%), Postives = 90/185 (48.65%), Query Frame = -1
Query:  324 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQ----QRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNA---KSDVYSFGVVLLELLTGRKPVDHTLPRGQ 857
            + F  +V+++ + +H N +  +GY       ++  ++    SL+  LH            VL  +    Q + IA   A+G++YLH K   +IIHRD+KS+N+ + +    KI DF L+      +      ++ G+  + APE       N    +SDVYS+G+VL EL+TG  P  H   R Q
Sbjct:  379 QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT-QWCEGSSLYYHLH------------VLDTKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKTRWSGSQQVEQLTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIRDRDQ 547          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: PKNB_BIFLO (Probable serine/threonine-protein kinase pknB OS=Bifidobacterium longum GN=pknB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = -1
Query:  297 LAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARL-HSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPV--DHTLPRGQQSLVTWATP 761
            +  E+    +L DI+     V GA     LS +   ++ +G    L+Y H      IIHRDIK  N++I +  V K+ DF ++    D AA +  S  V+GT  Y +PE A    ++ +SD+YS G VL E+LTGR P   D  +    Q +   ATP
Sbjct:   98 IVMEYVKGQTLRDIIK----VNGA-----LSQRDCEQVMLGVLNALDYSHRMG---IIHRDIKPGNIMISEQGVVKVMDFGIARALDDSAATMTQSQGVVGTAQYLSPEQARGETVDMRSDLYSAGCVLYEMLTGRPPFTGDSAVAIAYQHVSEVATP 243          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: PKN5_MYXXA (Serine/threonine-protein kinase pkn5 OS=Myxococcus xanthus GN=pkn5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  288 KGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPR--GQQSLVTWATPKLS 632
            + L Y+H      ++HRD+K SN+++ DD   ++ DF L+    D AA   + +++GT+ Y APE  +   L+ ++D+YS GV+L ELL+GR P D   P    +Q L T   P L+
Sbjct:  230 EALAYIHGHG---LVHRDLKPSNIMVDDDRQVRLMDFGLAKFLADDAAITEAGKLVGTYRYMAPEQILGEPLDGRADLYSLGVILYELLSGRPPFDAKTPHELWRQVLETEPPPVLA 343          
The following BLAST results are available for this feature:
BLAST of CF835847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FYN_BOVIN3.901e-1434.10Proto-oncogene tyrosine-protein kinase Fyn OS=Bos ... [more]
DDR1_RAT3.901e-1431.03Epithelial discoidin domain-containing receptor 1 ... [more]
PKSC_STRCO5.095e-1430.00Serine/threonine-protein kinase pksC OS=Streptomyc... [more]
NTRK3_SAIBB5.095e-1425.88NT-3 growth factor receptor OS=Saimiri boliviensis... [more]
LTK_HUMAN5.095e-1427.64Leukocyte tyrosine kinase receptor OS=Homo sapiens... [more]
ROS_RAT6.654e-1431.03Proto-oncogene tyrosine-protein kinase ROS OS=Ratt... [more]
ROS_MOUSE6.654e-1431.61Proto-oncogene tyrosine-protein kinase ROS OS=Mus ... [more]
RAF1_XENLA6.654e-1429.73RAF proto-oncogene serine/threonine-protein kinase... [more]
PKNB_BIFLO6.654e-1434.81Probable serine/threonine-protein kinase pknB OS=B... [more]
PKN5_MYXXA6.654e-1436.75Serine/threonine-protein kinase pkn5 OS=Myxococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835847 ID=CF835847; Name=CF835847; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTTTTTTTAATAGTTTGCAAGCCTGCATGTGTGCGCATACTTGC
CCACACACAAATGGGGGAGAGAGAGAGTCACTAGCTTGACTAGCTTGCTG
ATTCACCAGCAGGTCCAGGCCGTGCATTTAGCAGGGGCTGGAGGGCTTTG
ACAACAATGCTCATATTTGGACGGAAATCAGCTTCATACTGAACACACAG
AGCAGCAACTGCAGCCATCTTTGCAACTGCCTTGGGAGGATAATCTCCTC
CTAGTCTTGCATCAACGCATTGCCTAACCTTATCTTCACTAAGTTTCGGT
GTGGCCCATGTCACTAGACTCTGCTGTCCACGTGGTAGTGTATGATCGAC
AGGTTTTCGACCTGTCAGAAGCTCAAGCAGAACAACACCAAAGCTGTATA
CATCACTCTTTGCATTCAACTGTCCAGTCATTGCATACTCAGGAGCATGA
TAACCAAAAGTTCCAAGAACACGAGTAGAATGAAGGCGAGCTGCCATATC
AGGAGCTTGATTAGATAAATCAAAGTCGGCAATCTTTGCTACATCATCAT
CAAAAATTAGTACATTGCTGGACTTAATATCGCGATGGATAATATGAGGA
TCTGCCTTCTCATGCAAGTATTCAAGCCCTTTCGCAGCCCCTACAGCAAT
TTTCACTCGCTGTTGCCATGACAAAACAGGACCAGGCTGAGCTCCTTTTA
CACCTTTCCTCCCATGAAGAATATCATGAAGAGATCCATTAGATGCAAAC
TCGTAGGCAAGCACACGGGAAGTCCCATCAACACAATACCCGAGCAGCTG
AACAAAGTTTTCATGCTTCAACCTTGATACCATGGAAACCTGTGCTAAAA
ACTCCTC
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