CF835847

Overview
NameCF835847
Unique NameCF835847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835847_ssr67 microsatellite CF835847_ssr67:67..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2221 contig Csv1_Contig2221:567..1423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: IRAK2_MOUSE (Interleukin-1 receptor-associated kinase-like 2 OS=Mus musculus GN=Irak2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 54/171 (31.58%), Postives = 84/171 (49.12%), Query Frame = -1
Query:  345 AQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHS---TRVLGTFGYHAPE-YAMTGQLNAKSDVYSFGVVLLELLTGRKPVD 845
            A++ +  R  H N + LLG+C       L Y + +NGSLHD L  +          +L W QR  I  G    +E+LH      IIH ++KS+NVL+      K+A   +++  PD     ++   T +      + PE +   GQL  + D++S G+VL E+LTG   +D
Sbjct:  254 AEMQLCLRCCHANVLPLLGFCTGRQFHSLIYPYMANGSLHDRLWAQGN------SDMLPWPQRASICSGLLLAVEHLHSL---DIIHSNVKSANVLLDQHLNPKLA-HPVAHPHPDNKKTKYTVMRTHLFQASAAYLPEHFIRVGQLTKQVDIFSCGIVLAEVLTGIPAMD 414          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: IPL1_YARLI (Spindle assembly checkpoint kinase OS=Yarrowia lipolytica GN=IPL1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = -1
Query:  318 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQS 857
            ++F  +V + S L+H N ++L G+  D     L  E+  +G L+ +L  +K    +     +            ++ L YLH K   +IIHRDIK  N+L+  +D  KI+DF  S  AP        + + GT  Y  PE   +   +   DV+S G+++ E L G  P +   P G Q+
Sbjct:  142 KQFRREVEIQSNLRHTNVLRLFGHFHDKDRVYLILEYVVHGELYKLLRNQKRFTESTASSYIYQM---------SEALLYLHGK---NIIHRDIKPENILLHFNDTIKISDFGWSVHAPSN----RRSTLCGTMDYLPPEIVQSRPYDKNVDVWSLGILMYEFLCGAPPFEE--PGGAQA 303          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: FGFR2_MOUSE (Fibroblast growth factor receptor 2 OS=Mus musculus GN=Fgfr2 PE=2 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 51/172 (29.65%), Postives = 90/172 (52.33%), Query Frame = -1
Query:  363 EFLAQVSMVSRL-KHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK--GVKGAQ-----PGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT 854
            + ++++ M+  + KH+N + LLG C       +  E+AS G+L + L  R+  G++ +      P   ++++  V      A+G+EYL   A    IHRD+ + NVL+ +++V KIADF L+    ++     +T       + APE         +SDV+SFGV++ E+ T
Sbjct:  530 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 698          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: FGFR2_HUMAN (Fibroblast growth factor receptor 2 OS=Homo sapiens GN=FGFR2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 51/172 (29.65%), Postives = 90/172 (52.33%), Query Frame = -1
Query:  363 EFLAQVSMVSRL-KHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK--GVKGAQ-----PGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT 854
            + ++++ M+  + KH+N + LLG C       +  E+AS G+L + L  R+  G++ +      P   ++++  V      A+G+EYL   A    IHRD+ + NVL+ +++V KIADF L+    ++     +T       + APE         +SDV+SFGV++ E+ T
Sbjct:  530 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 698          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: FGFR2_CHICK (Fibroblast growth factor receptor 2 OS=Gallus gallus GN=FGFR2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 51/172 (29.65%), Postives = 89/172 (51.74%), Query Frame = -1
Query:  363 EFLAQVSMVSRL-KHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK--GVK-----GAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT 854
            + ++++ M+  + KH+N + LLG C       +  E+AS G+L + L  R+  G++        P   ++++  V      A+G+EYL   A    IHRD+ + NVL+ +++V KIADF L+    ++     +T       + APE         +SDV+SFGV++ E+ T
Sbjct:  532 DLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSFDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 700          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: FES_FSVGA (Tyrosine-protein kinase transforming protein Fes OS=Feline sarcoma virus (strain Gardner-Arnstein) GN=V-FES PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 63/241 (26.14%), Postives = 101/241 (41.91%), Query Frame = -1
Query:  132 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQPL 854
            +FL +  ++ +  H N V+L+G C       +  E    G     L      +GA+    L  +  +++   AA G+EYL  K     IHRD+ + N L+ + +V KI+DF +S +A D               + APE    G+ +++SDV+SFG++L E                 SL     P LS  + R+ V+       P             C  YE   RP+ S + + LQ +
Sbjct:  390 KFLQEAKILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR----TEGAR----LRMKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREAADGIYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETF---------------SLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSAIYQELQSI 604          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: CDC15_YEAST (Cell division control protein 15 OS=Saccharomyces cerevisiae GN=CDC15 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 48/168 (28.57%), Postives = 81/168 (48.21%), Query Frame = -1
Query:  351 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 854
            + +A++S++  L H N V+  G+        +  E+ +NGSL  ++        ++    LS  +          GL+YLH +    +IHRDIK++N+L+  D+  K+ADF +S      A  L      GT  + APE       +  SD++S G  ++E+LT   P
Sbjct:   66 DIMAEISLLKNLNHNNIVKYHGFIRKSYELYILLEYCANGSLRRLI--------SRSSTGLSENESKTYVTQTLLGLKYLHGEG---VIHRDIKAANILLSADNTVKLADFGVSTIVNSSALTL-----AGTLNWMAPEILGNRGASTLSDIWSLGATVVEMLTKNPP 217          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: YES_CANFA (Proto-oncogene tyrosine-protein kinase Yes OS=Canis familiaris GN=YES1 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = -1
Query:  351 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRV-LAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTF--GYHAPEYAMTGQLNAKSDVYSFGVVLLELLT-GRKP 857
            E FL +  ++ +L+H+  V L  Y V     + +  EF S GSL D L  ++G      G  L   Q V +A   A G+ Y+      + IHRD++++N+L+ ++ V KIADF L+    D     ++ R    F   + APE A+ G+   KSDV+SFG++  EL T GR P
Sbjct:  311 EAFLQEAQIMKKLRHDKLVPL--YAVVSEEPIYIVTEFMSKGSLLDFL--KEG-----DGKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGENLVCKIADFGLARLIED---NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILQTELTTKGRVP 468          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: Y0138_DICDI (Probable serine/threonine-protein kinase DDB_G0278509 OS=Dictyostelium discoideum GN=DDB_G0278509 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 60/209 (28.71%), Postives = 93/209 (44.50%), Query Frame = -1
Query:  345 EEFLAQVSMVSRLK-HENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDL-------------------------------------SNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVD 857
            ++F  +V ++S+LK HEN +   G C       +  E+   GSLHD+LH  + +K       L ++Q+V  A+  A G  +L    +P I H D+K+ N+L+ +    KIADF L                                     SN   +    +  +R+   F Y APE   +   + KSDV+SFG +L EL+T + P D
Sbjct:  984 DDFRREVGILSKLKPHENLLAYYGACKHANYCYIITEYLPRGSLHDLLHREQLMK-------LDFKQKVSFAICVALGCYHL-STYEPPIYHTDLKTKNLLVTNALKIKIADFGLASFAKKSLTTIINNNNNTNNTATSSTTTSSANGANSISNNNNNGTTSVDQSRLAYAF-YAAPEILNSKHFSEKSDVFSFGTILWELVTNKIPFD 1183          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: STK4_MOUSE (Serine/threonine-protein kinase 4 OS=Mus musculus GN=Stk4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 57/208 (27.40%), Postives = 97/208 (46.63%), Query Frame = -1
Query:  264 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLV------TWATPKLSEDK----VRQCV 857
            +E + ++S++ +    + V+  G     T   +  E+   GS+ DI+  R           L+  +   I     KGLEYLH       IHRDIK+ N+L+  +  AK+ADF ++ Q  D  A+ ++  V+GT  + APE       N  +D++S G+  +E+  G+ P     P     ++      T+  P+L  D     V+QC+
Sbjct:   68 QEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRN--------KTLTEDEIATILQSTLKGLEYLHFMRK---IHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT--VIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFMDFVKQCL 262          
The following BLAST results are available for this feature:
BLAST of CF835847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IRAK2_MOUSE1.936e-1331.58Interleukin-1 receptor-associated kinase-like 2 OS... [more]
IPL1_YARLI1.936e-1329.44Spindle assembly checkpoint kinase OS=Yarrowia lip... [more]
FGFR2_MOUSE1.936e-1329.65Fibroblast growth factor receptor 2 OS=Mus musculu... [more]
FGFR2_HUMAN1.936e-1329.65Fibroblast growth factor receptor 2 OS=Homo sapien... [more]
FGFR2_CHICK1.936e-1329.65Fibroblast growth factor receptor 2 OS=Gallus gall... [more]
FES_FSVGA1.936e-1326.14Tyrosine-protein kinase transforming protein Fes O... [more]
CDC15_YEAST1.936e-1328.57Cell division control protein 15 OS=Saccharomyces ... [more]
YES_CANFA2.529e-1334.68Proto-oncogene tyrosine-protein kinase Yes OS=Cani... [more]
Y0138_DICDI2.529e-1328.71Probable serine/threonine-protein kinase DDB_G0278... [more]
STK4_MOUSE2.529e-1327.40Serine/threonine-protein kinase 4 OS=Mus musculus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835847 ID=CF835847; Name=CF835847; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTTTTTTTAATAGTTTGCAAGCCTGCATGTGTGCGCATACTTGC
CCACACACAAATGGGGGAGAGAGAGAGTCACTAGCTTGACTAGCTTGCTG
ATTCACCAGCAGGTCCAGGCCGTGCATTTAGCAGGGGCTGGAGGGCTTTG
ACAACAATGCTCATATTTGGACGGAAATCAGCTTCATACTGAACACACAG
AGCAGCAACTGCAGCCATCTTTGCAACTGCCTTGGGAGGATAATCTCCTC
CTAGTCTTGCATCAACGCATTGCCTAACCTTATCTTCACTAAGTTTCGGT
GTGGCCCATGTCACTAGACTCTGCTGTCCACGTGGTAGTGTATGATCGAC
AGGTTTTCGACCTGTCAGAAGCTCAAGCAGAACAACACCAAAGCTGTATA
CATCACTCTTTGCATTCAACTGTCCAGTCATTGCATACTCAGGAGCATGA
TAACCAAAAGTTCCAAGAACACGAGTAGAATGAAGGCGAGCTGCCATATC
AGGAGCTTGATTAGATAAATCAAAGTCGGCAATCTTTGCTACATCATCAT
CAAAAATTAGTACATTGCTGGACTTAATATCGCGATGGATAATATGAGGA
TCTGCCTTCTCATGCAAGTATTCAAGCCCTTTCGCAGCCCCTACAGCAAT
TTTCACTCGCTGTTGCCATGACAAAACAGGACCAGGCTGAGCTCCTTTTA
CACCTTTCCTCCCATGAAGAATATCATGAAGAGATCCATTAGATGCAAAC
TCGTAGGCAAGCACACGGGAAGTCCCATCAACACAATACCCGAGCAGCTG
AACAAAGTTTTCATGCTTCAACCTTGATACCATGGAAACCTGTGCTAAAA
ACTCCTC
back to top