CF835847

Overview
NameCF835847
Unique NameCF835847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835847_ssr67 microsatellite CF835847_ssr67:67..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2221 contig Csv1_Contig2221:567..1423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.332e-38
Identity = 92/239 (38.49%), Postives = 133/239 (55.65%), Query Frame = -1
Query:  141 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVD-HTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKAL 854
            EF  +V +V++L+H N V+LLGYC++G  ++L YEF  N SL   L      +       L W +R KI  G A+G+ YLH+ +   IIHRD+K+ N+L+  D   K+ADF ++          ++ RV+GT+GY APEYAM GQ + KSDVYSFGV++ E+++G K    + +     +LVT+     S       VD   G +Y             LCVQ + D RPNMS +V+ L
Sbjct:  548 EFENEVVVVAKLQHRNLVRLLGYCLEGEEKILVYEFVHNKSLDYFLFDTTMKRQ------LDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGQFSMKSDVYSFGVLVFEIISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVDPSFGDNYQTHDITRCIHIALLCVQEDVDDRPNMSAIVQML 780          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.739e-38
Identity = 93/246 (37.80%), Postives = 132/246 (53.66%), Query Frame = -1
Query:  117 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQPLLNARP 854
            EF+ ++ M+S L+H N V+L G C++G   +L YE+  N SL   L G +  +       L W  R K+ +G AKGL YLHE++   I+HRDIK++NVL+     AKI+DF L+    +    + STR+ GT GY APEYAM G L  K+DVYSFGVV LE+++G+   ++        L+ WA     +  + + VD  LG  +             LC       RP MS VV  LQ  +  +P
Sbjct:  707 EFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLH-----LDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHI-STRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQGKIKVQP 946          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.739e-38
Identity = 92/238 (38.66%), Postives = 130/238 (54.62%), Query Frame = -1
Query:  138 FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQ 851
            F  ++ ++  +KH   V L GYC   TS++L Y++   GSL + LH R        G  L W  RV I +GAAKGL YLH    P IIHRDIKSSN+L+  +  A+++DF L+    D  + + +T V GTFGY APEY  +G+   K+DVYSFGV++LE+L+G++P D +      ++V W    +SE + R  VD    G                CV    + RP M  VV+ L+
Sbjct:  347 FERELEILGSIKHRYLVNLRGYCNSPTSKLLLYDYLPGGSLDEALHER--------GEQLDWDSRVNIIIGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHI-TTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNVVGWLKFLISEKRPRDIVDPNCEG-MQMESLDALLSIATQCVSPSPEERPTMHRVVQLLE 574          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.966e-38
Identity = 98/244 (40.16%), Postives = 136/244 (55.74%), Query Frame = -1
Query:  129 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH-GRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSE-DKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQPLL 854
            EFL  VS V +LK  + ++LLGYC +   R+L YE+  NGSL D LH  RK  K       L+W  R+ IA+GA+K L++LHE   P ++H++ KSS VL+      ++AD  L+   P       +       GY APE    G    +SDV+S GVV+LELLTGR+P D T PRG Q+L  WA P+L + D + + VD  L G YP           +  +Q E  FRP +S +V+ LQ ++
Sbjct:  539 EFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKK------LTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADSGLAYMLPPRPTSQMA-------GYAAPEVEY-GSYTCQSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSLHGAYPMKSLSRFADIISRSLQMEPGFRPPISEIVQDLQHMI 768          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.966e-38
Identity = 97/254 (38.19%), Postives = 142/254 (55.91%), Query Frame = -1
Query:  105 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQ-QSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKAL--QPLLNARPGPAG 857
            +EF  +V +V++L+H N V+LLGYC++G  ++L YEF  N SL   L     ++G      L W +R KI  G A+G+ YLH+ +   IIHRD+K+ N+L+  D   K+ADF ++          ++ RV+GT+GY APEYAM G+ + KSDVYSFGV++LE+++G K        G   +LVT+     S     + VD   G +Y             LCVQ +A+ RP MS +V+ L    +  A P P G
Sbjct:  383 KEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDYFLFDPT-MQGQ-----LDWSRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGKFSMKSDVYSFGVLVLEIVSGMKNSSLDQMDGSISNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDANDRPTMSAIVQMLTTSSIALAVPRPPG 630          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: Y5189_ARATH (Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 93/243 (38.27%), Postives = 130/243 (53.50%), Query Frame = -1
Query:  129 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQPLL 857
            +EF A+V ++ R+ H + V L+GYC DG +  L YE+   G L + + G+  V       VLSW+ R++IAV AA+GLEYLH    P ++HRD+K +N+L+ +   AK+ADF LS   P        T V GT GY  PEY  T  L+ KSDVYSFGVVLLE++T +  ++    R +  +  W    L+   ++  VD +L  DY              CV   +  RP M  VV  L   L
Sbjct:  608 KEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMEKGDLRENMSGKHSVN------VLSWETRMQIAVEAAQGLEYLHNGCRPPMVHRDVKPTNILLNERSQAKLADFGLSRSFPVDGESHVMTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVMNKN--RERPHINEWVMFMLTNGDIKSIVDPKLNEDYDTNGVWKVVELALACVNPSSSRRPTMPHVVMELNECL 842          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 95/248 (38.31%), Postives = 138/248 (55.65%), Query Frame = -1
Query:  117 FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG-RKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHS--TRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQPLLNARP 851
            F A+V  +  ++H++ V+L   C  G  ++L YE+  NGSL D+LHG RKG      G VL W +R++IA+ AA+GL YLH    P I+HRD+KSSN+L+  D  AK+ADF ++       ++     + + G+ GY APEY  T ++N KSD+YSFGVVLLEL+TG++P D  L  G + +  W    L +  +   +D +L   +             LC       RP+M  VV  LQ +  A P
Sbjct:  734 FAAEVETLGTIRHKSIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDRKG------GVVLGWPERLRIALDAAEGLSYLHHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSKTPEAMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSEL--GDKDMAKWVCTALDKCGLEPVIDPKLDLKF-KEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVP 972          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 92/240 (38.33%), Postives = 137/240 (57.08%), Query Frame = -1
Query:  141 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQ--SLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKAL 854
            EF  +V +V++L+H N V+LLG+C++   R+L YEF  N SL   +        +    +L W +R KI  G A+G+ YLH+ +   IIHRD+K+ N+L+ DD  AKIADF ++          ++ R++GT+GY +PEYAM GQ + KSDVYSFGV++LE+++G+K  +     G    +LVT+     S     + VD     +Y             LCVQ EA+ RP MS +V+ L
Sbjct:  391 EFANEVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSLDYFIFD------STMQSLLDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLGDDMNAKIADFGMARIFGMDQTEANTRRIVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEIISGKKNSNVYQMDGTSAGNLVTYTWRLWSNGSPLELVDPSFRDNYRINEVSRCIHIALLCVQEEAEDRPTMSAIVQML 624          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.608e-38
Identity = 90/241 (37.34%), Postives = 132/241 (54.77%), Query Frame = -1
Query:  138 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQS--LVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKALQ 854
            +F  +V M+S   H N ++L G+C+  T R+L Y + +NGS+   L  R      +  P L W +R  IA+G+A+GL YLH+  D  IIHRD+K++N+L+ ++  A + DF L+       + + +T V GT G+ APEY  TG+ + K+DV+ +GV+LLEL+TG+K  D           L+ W    L E K+   VDA L G Y             LC Q  A  RP MS VV+ L+
Sbjct:  335 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERP-----EGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAVVGDFGLAKLMNYNDSHV-TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLE 569          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.608e-38
Identity = 88/238 (36.97%), Postives = 134/238 (56.30%), Query Frame = -1
Query:  141 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXALCVQYEADFRPNMSIVVKAL 854
            EF+A++  + RL+H+N V L G+C      +L Y++  NGSL  +L+     K  + G VLSW  R +IA G A GL YLHE+ +  +IHRD+K SNVLI  D   ++ DF L+ +  +  ++  +T V+GT GY APE A  G  ++ SDV++FGV+LLE+++GRKP D     G   +  W     +  ++   +D RLG  Y             LC  ++ + RP M +V++ L
Sbjct:  404 EFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDYIPNGSLDSLLYS----KPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEQIVIHRDVKPSNVLIDSDMNPRLGDFGLA-RLYERGSQSCTTVVVGTIGYMAPELARNGNSSSASDVFAFGVLLLEIVSGRKPTD----SGTFFIADWVMELQASGEILSAIDPRLGSGYDEGEARLALAVGLLCCHHKPESRPLMRMVLRYL 632          
The following BLAST results are available for this feature:
BLAST of CF835847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CRK23_ARATH1.332e-3838.49Putative cysteine-rich receptor-like protein kinas... [more]
Y5344_ARATH1.739e-3837.80Probable LRR receptor-like serine/threonine-protei... [more]
FEI1_ARATH1.739e-3838.66LRR receptor-like serine/threonine-protein kinase ... [more]
SUB_ARATH2.966e-3840.16Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
CRK20_ARATH2.966e-3838.19Putative cysteine-rich receptor-like protein kinas... [more]
Y5189_ARATH5.060e-3838.27Probable LRR receptor-like protein kinase At1g5189... [more]
RLK5_ARATH5.060e-3838.31Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
CRK4_ARATH5.060e-3838.33Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
SERK4_ARATH6.608e-3837.34Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
LRKA3_ARATH6.608e-3836.97Lectin-domain containing receptor kinase A4.3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835847 ID=CF835847; Name=CF835847; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTTTTTTTAATAGTTTGCAAGCCTGCATGTGTGCGCATACTTGC
CCACACACAAATGGGGGAGAGAGAGAGTCACTAGCTTGACTAGCTTGCTG
ATTCACCAGCAGGTCCAGGCCGTGCATTTAGCAGGGGCTGGAGGGCTTTG
ACAACAATGCTCATATTTGGACGGAAATCAGCTTCATACTGAACACACAG
AGCAGCAACTGCAGCCATCTTTGCAACTGCCTTGGGAGGATAATCTCCTC
CTAGTCTTGCATCAACGCATTGCCTAACCTTATCTTCACTAAGTTTCGGT
GTGGCCCATGTCACTAGACTCTGCTGTCCACGTGGTAGTGTATGATCGAC
AGGTTTTCGACCTGTCAGAAGCTCAAGCAGAACAACACCAAAGCTGTATA
CATCACTCTTTGCATTCAACTGTCCAGTCATTGCATACTCAGGAGCATGA
TAACCAAAAGTTCCAAGAACACGAGTAGAATGAAGGCGAGCTGCCATATC
AGGAGCTTGATTAGATAAATCAAAGTCGGCAATCTTTGCTACATCATCAT
CAAAAATTAGTACATTGCTGGACTTAATATCGCGATGGATAATATGAGGA
TCTGCCTTCTCATGCAAGTATTCAAGCCCTTTCGCAGCCCCTACAGCAAT
TTTCACTCGCTGTTGCCATGACAAAACAGGACCAGGCTGAGCTCCTTTTA
CACCTTTCCTCCCATGAAGAATATCATGAAGAGATCCATTAGATGCAAAC
TCGTAGGCAAGCACACGGGAAGTCCCATCAACACAATACCCGAGCAGCTG
AACAAAGTTTTCATGCTTCAACCTTGATACCATGGAAACCTGTGCTAAAA
ACTCCTC
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